View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2800-Insertion-1 (Length: 718)
Name: NF2800-Insertion-1
Description: NF2800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2800-Insertion-1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 558; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 8 - 707
Target Start/End: Complemental strand, 38882934 - 38882226
Alignment:
| Q |
8 |
gaaaacaccttatgaacaatttgataatctgttttcataacttctcataaacagacagtcacacaaaatttaagtcagtcaataaactcaaataatgcaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
38882934 |
gaaaacaccttatgaacaatttgataatctgttttcataacttctcataaacagacagtcacacaaaatttaagtcagtcgataagctcaaataatgcaa |
38882835 |
T |
|
| Q |
108 |
tctaaacatgcattgcattaacggacttgaatataaaccttttgaaaccatgattttggtttgtaaggaacacttctgaagtgaaatactattattatta |
207 |
Q |
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| T |
38882834 |
tctaaacgtgcattgcattaacggacttgaatataaaccttttgaaaccatgattttggtttgtaaggaacacttctgaagtgaaatattattattatta |
38882735 |
T |
|
| Q |
208 |
catgttatcgagattctgaaagagaaaattaccgtagcttctatggtatcggagtttgtagtgcctttcatcattagacggttagcaacttcaattagtc |
307 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38882734 |
catgttatcgagattttgaaagagaaaattaccgtagcttctatggtatcggagtttgtagtgcctttcatcattagacggttagcaacttcaattagtc |
38882635 |
T |
|
| Q |
308 |
cgtcatatccaagtttcttcgagtcccatcccacttcctgttatagtattcataatca-acaccatttctttctaaaagctataaataagttaactagaa |
406 |
Q |
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||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
38882634 |
cgtcatatccaggtttcttcgattcccatcccacttcctgttatagtattcataatcacacgccatttctttctaaaagctataaataagttaactagaa |
38882535 |
T |
|
| Q |
407 |
ggggc----------ttgtttggttacctgaaccaatttggtgcgaaacaaattgaggaataaatcatcaataacccctggcttgtattcattctttgga |
496 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
38882534 |
ggggcttgtttgtgtttgtttggttacctgaaccaatttggtgcgaaacaaattgaggaacaaatcatcaataacccctggcttgtattcactctttgga |
38882435 |
T |
|
| Q |
497 |
gctgctgcaactcccacctaattcaaattcaatcannnnnnnnnnnnnnnnnnnaaatttcataatcgcacacgaaaaacaatagcaaaatatgcaaacc |
596 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38882434 |
gctgctgcaactcccacctaattcaaattcaatca--acacacacacacacacaaaatttcataatcgcacacgaaaaacaatagcaaaatatgcaaacc |
38882337 |
T |
|
| Q |
597 |
gttttgggtcccgacgatgaagaggctgaaacgcagaactgacgtatacgaattccattagaacaaagcggtggaacaccaccaacaacaatacctaccg |
696 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38882336 |
gttttgggtcccgacgatgaagaggctgaaacgcagaactgacgtttacgaattccattagaacaaagcggtggaacaccaccaacaacaatacctaccg |
38882237 |
T |
|
| Q |
697 |
ccttcttttct |
707 |
Q |
| |
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||||| ||||| |
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| T |
38882236 |
ccttcatttct |
38882226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 9559444 - 9559391
Alignment:
| Q |
8 |
gaaaacaccttatgaacaatttgataatctgttttcataacttctcataaacag |
61 |
Q |
| |
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||||||| |||||||||||| | ||| |||||||||||||||||| ||||||| |
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| T |
9559444 |
gaaaacagcttatgaacaatgttgtaagctgttttcataacttctcctaaacag |
9559391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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