View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2800-Insertion-2 (Length: 146)
Name: NF2800-Insertion-2
Description: NF2800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2800-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 110; Significance: 9e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 9e-56
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 45037374 - 45037491
Alignment:
| Q |
8 |
gctatgttatggcgtcatcctgaaaatgttgagcttcataaagtcaaggttgttcactattgtgcagcggtaagtaatggaatgcatattttgatttatt |
107 |
Q |
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| T |
45037374 |
gctatgttatggcgtcaccctgaaaatgttgagcttcataaagtcaaggttgttcactattgtgcagcggtaagtaatgcaatgcatattttgatttatt |
45037473 |
T |
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| Q |
108 |
gattgtgtgaataaattt |
125 |
Q |
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| T |
45037474 |
gattgtgtgaataaattt |
45037491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 45944078 - 45944023
Alignment:
| Q |
17 |
tggcgtcatcctgaaaatgttgagcttcataaagtcaaggttgttcactattgtgc |
72 |
Q |
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| T |
45944078 |
tggcgtcatcctgagaatgttgagcttgagaaagttcaagttgttcactattgtgc |
45944023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 20395294 - 20395365
Alignment:
| Q |
11 |
atgttatggcgtcatcctgaaaatgttgagcttcataaagtcaaggttgttcactattgtgcagcggtaagt |
82 |
Q |
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| T |
20395294 |
atgttgtggcgtcatcctgagaatgttgaacttgagaaagtcaaagttgttcattactgtgcagcggtaagt |
20395365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.0000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 37686983 - 37686915
Alignment:
| Q |
11 |
atgttatggcgtcatcctgaaaatgttgagcttcataaagtcaaggttgttcactattgtgcagcggta |
79 |
Q |
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| T |
37686983 |
atgttgtggcgtcaccctgagaatgttgaacttgagaaagtcaaagttgttcattactgtgcagcggta |
37686915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 37698535 - 37698603
Alignment:
| Q |
11 |
atgttatggcgtcatcctgaaaatgttgagcttcataaagtcaaggttgttcactattgtgcagcggta |
79 |
Q |
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| T |
37698535 |
atgttgtggcgtcaccctgagaatgttgaacttgagaaagtcaaagttgttcattactgtgcagcggta |
37698603 |
T |
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