View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2800R-Insertion-1 (Length: 1100)
Name: NF2800R-Insertion-1
Description: NF2800R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2800R-Insertion-1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 539; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 8 - 848
Target Start/End: Original strand, 38002996 - 38003819
Alignment:
| Q |
8 |
aagaaacatattgaaaacaaaattttgggcacgtttaggataaggaaccatcaggtggattggatgtgttagatgataaggcatgctggtcaaatatctt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38002996 |
aagaaacatattgaaaacaaaattttgggcacgtttaggataaggaaccatcaggtggattggatgtgttagatgataaggcatgctgctcaaatatctt |
38003095 |
T |
|
| Q |
108 |
tcttatttatctagctgtgaaagtaacgacaaagtggaaccaacgtagagtaaatggtattccatgattatgtcacattcnnnnnnnnnnnnnnnnattt |
207 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38003096 |
acttat----ctagctgtgaaagtaacgacaaagtggaaccaacgtagagtaaatggtattccatgattatgtcacattcttttgttttttcttttattt |
38003191 |
T |
|
| Q |
208 |
atctccaaaaccactagacatagcctctgttttctccaaaccatgtgtgnnnnnnnnatcttgctagcacctggtatcttgttccactgatcaatcttgg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38003192 |
atctccaaaaccactagacatagcctctgttttctccaaaccatgtgt---ttttttatcttgctagctcctggtatcttgttccactgatcaatcttgg |
38003288 |
T |
|
| Q |
308 |
aatgtccatataaataagaccaaccatcactccttttttcttcatcaatcaatcaacaaactcactttcatatttaccaaacaacactatctacatctta |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38003289 |
aatgtccatataaataagaccaaccatcactccttttttcttcatcaatcaatcaacaaactcactttcatatttaccaaacaacactatctatatctta |
38003388 |
T |
|
| Q |
408 |
atttgatatccaaaaatcatgaatcgtgcaacagcaacaagcaaagcctggatggtggctgcaagtgttggagttgtggaggctttgaaagaccaagctg |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
38003389 |
atttgatatccaaaaatcatgaatcgtgcaacagcaacaagcaaagcatggatggtggctgcaagtgttggagttgtggaagctttgaaagatcaagctg |
38003488 |
T |
|
| Q |
508 |
gtatttgcagatggaactatggtttaagacaagctcaacaacaccttaaaaaccgtgttagatcaatgtctcaagcaaagaatttctcttcttcttcatt |
607 |
Q |
| |
|
||||||| || ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38003489 |
gtatttgtaggtggaattatgctttaagacaagctcaacaacaccttaaaaaccgtgttagatcaatttctcaagcaaagaatttctcttcttcttcatt |
38003588 |
T |
|
| Q |
608 |
tgttgctaccaaatttaaggatgacaagaaggccaaacaggcagaggagtctttgaggactgtcatgtacttgagctgctggggtcctaattgattaatt |
707 |
Q |
| |
|
| |||||| |||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
38003589 |
tcttgctaacaaacttaaggatgagaagaaggcaaaacaggcagaggagtctttgaggactgtcatgtacttgagctgttggggtcccaattgattaatt |
38003688 |
T |
|
| Q |
708 |
tgtaaatataattattatattatatagtgatgttagattagataaactatgtaaagtttgtaatatcaaacggc------aatattattcaatgaggaaa |
801 |
Q |
| |
|
|| || |||||||| ||||||||||| | |||||||||||||||||||||||| | | |||||||||||||||||| |
|
|
| T |
38003689 |
tg------------------tacatagtgatattagattagattatttatgtaaagtttgtaatatcaaactacagtactattattattcaatgaggaaa |
38003770 |
T |
|
| Q |
802 |
gtttattcttcac--atctttgtttctcagtgcatacccgatcagtatt |
848 |
Q |
| |
|
||||||||||||| |||| |||||| ||||||||||||||||||||| |
|
|
| T |
38003771 |
gtttattcttcacatatctatgtttcaaagtgcatacccgatcagtatt |
38003819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 417 - 1000
Target Start/End: Original strand, 38024909 - 38025487
Alignment:
| Q |
417 |
ccaaaaatcatgaatcgtgcaacagcaacaagcaaagcctggatggtggctgcaagtgttggagttgtggaggctttgaaagaccaagctggtatttgca |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || | |
|
|
| T |
38024909 |
ccaaaaatcatgaatcgtgcaacagcaacaagcaaagcctggatggtggctgcaagtgttggagttgtggaagctttgaaagatcaagctggtatctgta |
38025008 |
T |
|
| Q |
517 |
gatggaactatggtttaagacaagctcaacaacaccttaaaaaccgtgttagatcaatgtctcaagcaaagaatttctcttcttcttcatttgttgctac |
616 |
Q |
| |
|
| |||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38025009 |
ggtggaactatgctttaagacaagctcaacaacaccttaaaaaccgtgctaaatcaatgtctcaagcaaagaatttctcttcttcttcatttcttgctac |
38025108 |
T |
|
| Q |
617 |
caaatttaaggatgacaagaaggccaaacaggcagaggagtctttgaggactgtcatgtacttgagctgctggggtcctaattgattaatttgtaaatat |
716 |
Q |
| |
|
||||||||||||||| |||||| ||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38025109 |
caaatttaaggatgagaagaagtccaaacaagcagaggagtctctaaggactgtcatgtacttgagctgctggggtcctaattgattaatttgtaaatat |
38025208 |
T |
|
| Q |
717 |
aattattatattatatagtgatgttagattagataaactatgtaaagtttgtaatatcaaacggcaatattattcaatgaggaaagtttattcttcacat |
816 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
38025209 |
aattattatattacatagtgatgttagattagataaactatgtaaagtttgtaatatcaaacggcaatattattcaatgaggaaagtttattcttcatat |
38025308 |
T |
|
| Q |
817 |
ctttgtttctcagtgcatacccgatcagta--ttattannnnnnnnnnggtagtgagtgtgttatgatgatcagatgggtagtactttaaattttccatc |
914 |
Q |
| |
|
|||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||| ||||||||||||||||| | ||| |
|
|
| T |
38025309 |
ctttgtttctcagtgcatacccgatcagtattttttttatttttttttggtagtgagtgtgttatgatgatcagat-ggtagtactttaaatttgctatc |
38025407 |
T |
|
| Q |
915 |
aacaaaaaactttaccacatcttgattaatttgttcgtgataaattcgtcttgagctgagttgtttaaaagttcaaaaacagaact |
1000 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| | | |||||||||| |||||||||||| ||||||||||| |
|
|
| T |
38025408 |
aacaaaaa--cttaccacatcttgattaatttgttcgtgataaa-tatttttgagctgag-tgtttaaaagtt--aaaacagaact |
38025487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 358 - 848
Target Start/End: Original strand, 38031589 - 38032064
Alignment:
| Q |
358 |
aatcaacaaactcactttcatatttaccaaacaacactatctacatcttaattt-gatatccaaaaatcatgaatcgtgcaacagcaacaagcaaagcct |
456 |
Q |
| |
|
||||||||| || | |||| |||||||||||||||||| ||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
38031589 |
aatcaacaatcttattttcttatttaccaaacaacactgtctacttctaaattttgatatccaaaaatcatgaatcgtgcaacagcaacaagcaaagcat |
38031688 |
T |
|
| Q |
457 |
ggatggtggctgcaagtgttggagttgtggaggctttgaaagaccaagctggtatttgcagatggaactatggtttaagacaagctcaacaacaccttaa |
556 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38031689 |
ggatggtggctgcaagtgttggagttgtggaggctttgaaagaccaagctggtatttgcagatggaactatggtttaagacaagctcaacaacaccttaa |
38031788 |
T |
|
| Q |
557 |
aaaccgtgttagatcaatgtctcaagcaaagaatttctcttcttcttcatttgttgctaccaaatttaaggatgacaagaaggccaaacaggcagaggag |
656 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
38031789 |
aaaccgtgttagatcaatttctcaagcaaagaatttctcttcttcttcatttcttgctaacaaacttaaggatgagaagaaggccaaacaggcagaggag |
38031888 |
T |
|
| Q |
657 |
tctttgaggactgtcatgtacttgagctgctggggtcctaattgattaatttgtaaatataattattatattatatagtgatgttagattagataaacta |
756 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||| || || || |
|
|
| T |
38031889 |
tctttgaggactgtcatgtacttgagctgctggggtcctaattgattaactt------------------atacatagtgatgttagattatattaatta |
38031970 |
T |
|
| Q |
757 |
tgtaaagtttgtaatatcaaacggcaatattattcaatgaggaaagtttattcttcac--atctttgtttctcagtgcatacccgatcagtatt |
848 |
Q |
| |
|
|||||| |||||||| | |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
38031971 |
tgtaaattttgtaatcttaaacggcaatattattcaatgaggaaagtttattcttcacatatctatgtttctcagtgcatacccgatcagtatt |
38032064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 355 - 401
Target Start/End: Original strand, 38024824 - 38024870
Alignment:
| Q |
355 |
atcaatcaacaaactcactttcatatttaccaaacaacactatctac |
401 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
38024824 |
atcaatcaacaatctcattttcatatttaccaaacaacactatctac |
38024870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 654 - 702
Target Start/End: Original strand, 2912477 - 2912525
Alignment:
| Q |
654 |
gagtctttgaggactgtcatgtacttgagctgctggggtcctaattgat |
702 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2912477 |
gagtctcttaggactgtcatgtacttgagctgctggggtccaaattgat |
2912525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 469 - 504
Target Start/End: Original strand, 38033799 - 38033834
Alignment:
| Q |
469 |
caagtgttggagttgtggaggctttgaaagaccaag |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38033799 |
caagtgttggagttgtggaggctttgaaagatcaag |
38033834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 640 - 694
Target Start/End: Original strand, 38022056 - 38022110
Alignment:
| Q |
640 |
ccaaacaggcagaggagtctttgaggactgtcatgtacttgagctgctggggtcc |
694 |
Q |
| |
|
|||| ||| ||||||| |||||||| |||||||||| |||||| ||||||||||| |
|
|
| T |
38022056 |
ccaagcagtcagaggaatctttgagaactgtcatgttcttgagttgctggggtcc |
38022110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 651 - 704
Target Start/End: Original strand, 38045095 - 38045148
Alignment:
| Q |
651 |
gaggagtctttgaggactgtcatgtacttgagctgctggggtcctaattgatta |
704 |
Q |
| |
|
||||| |||||||||| |||||||||||||| ||||||||||| |||| |||| |
|
|
| T |
38045095 |
gaggaatctttgaggaaggtcatgtacttgagttgctggggtcccaattaatta |
38045148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University