View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2800R-Insertion-3 (Length: 940)

Name: NF2800R-Insertion-3
Description: NF2800R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2800R-Insertion-3
NF2800R-Insertion-3
[»] chr8 (5 HSPs)
chr8 (276-922)||(41015105-41015751)
chr8 (7-272)||(41014238-41014503)
chr8 (263-390)||(1605267-1605393)
chr8 (265-400)||(11142697-11142831)
chr8 (271-400)||(1662526-1662654)
[»] chr1 (6 HSPs)
chr1 (265-389)||(4328782-4328906)
chr1 (264-400)||(35161947-35162082)
chr1 (271-400)||(29395391-29395519)
chr1 (271-400)||(30410795-30410923)
chr1 (263-346)||(41866976-41867059)
chr1 (271-346)||(28549359-28549434)
[»] chr7 (4 HSPs)
chr7 (275-810)||(34575602-34576145)
chr7 (271-390)||(13946647-13946765)
chr7 (279-346)||(33865605-33865671)
chr7 (265-391)||(20389908-20390033)
[»] chr3 (4 HSPs)
chr3 (271-400)||(4865120-4865248)
chr3 (269-400)||(55041454-55041584)
chr3 (271-366)||(30766014-30766108)
chr3 (279-346)||(23217047-23217113)
[»] chr2 (1 HSPs)
chr2 (271-545)||(17830842-17831116)
[»] chr4 (2 HSPs)
chr4 (269-346)||(34703765-34703842)
chr4 (274-346)||(43046273-43046345)
[»] chr6 (5 HSPs)
chr6 (265-345)||(6309166-6309246)
chr6 (279-346)||(11074870-11074936)
chr6 (274-400)||(32444477-32444602)
chr6 (265-302)||(31112468-31112505)
chr6 (274-400)||(11178361-11178486)
[»] scaffold0524 (1 HSPs)
scaffold0524 (265-300)||(5126-5161)
[»] chr5 (1 HSPs)
chr5 (269-302)||(37720060-37720093)


Alignment Details
Target: chr8 (Bit Score: 603; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 276 - 922
Target Start/End: Original strand, 41015105 - 41015751
Alignment:
Q  276 tattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatgccatt 375  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41015105 tattatctaatcctaaagtacaatgcacataactatttcaaaactctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatgccatt 41015204  T
Q  376 tttgaatttcaaatccagtacccttcaacctagcgctctaaacaatccttcatgcccattaaatgtggcttttcatttttcaagactctttgcgccgatt 475  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  41015205 tttgagtttcaaatccagtacccttcaacctagcgctctaaacaatccttcatgcccattaaatgtggcttttcatttttcaagaatctttgcgctgatt 41015304  T
Q  476 ctgcctatgaatatgaagagtctctaaattgctaatcaatgtttctaatttttcaatataacagttaccaatggaatgcacaatatgattgtataaatat 575  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41015305 ctgcctatgaatatgaagagtctctgaattggtaatcaatgtttctaatttttcaatgtaacagttaccaatggaatgcacaatatgattgtataaatat 41015404  T
Q  576 gaatcacctttctgatttcccatcacttccaatctctcccattctgtcatggcacacaataacatccagacctttttgtcataccagatgttaacggcca 675  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41015405 gaatcacctttctgatttcccatcacttccaatctctcccattctgtcatggcacacaataacatccagacctttttgtcataccagatgttaacagcca 41015504  T
Q  676 tgtattacctttcatcttacatcattttgtattctgaatttgcgttttggtttgactatctatgaataacacgcttattatgttgttatctgtttcttgc 775  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41015505 tgtattacctttcatcttacatcattttgtattctaaatttgcgttttggtttgactatctatgaataacacgcttattatgttgttatctgtttcttgc 41015604  T
Q  776 agcacccttggatccaaatccattaactgacatagacaggaatatgattgagcatgatgttgaatgggagtagactactgttgttttaatcatgcgaagt 875  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41015605 agcacccttggatccaaatccattaactgacatagacaggaatatgattgagcatgatgttgaatgggagtagactactgttgttttaatcatgcaaagt 41015704  T
Q  876 ttttaaaatatatacacaatcatatgcttatcatgctggtttatttt 922  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  41015705 ttttaaaatatatacacaatcatatgcttatcatgctggtttatttt 41015751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 7 - 272
Target Start/End: Original strand, 41014238 - 41014503
Alignment:
Q  7 caagttaaactaatatgtgatgtggtccattgtagtcgagtacctaaaaattgtccaaaaccaataactactaatgatgccctctaaaaatataagacgg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41014238 caagttaaactaatatgtgatgtggtccattgtagtcgagtacctaaaaattgtccaaaaccaataactactaatgatgccctttaaaaatataagacgg 41014337  T
Q  107 tgatctaatcctaagaattttccacaaagtggtgatgacggcatagagctatttactcgattgttgcagacattggcagagtaagaaatagtcaattttg 206  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41014338 tgatctaatcctaagaattttccacaaagtggtgatgacggcgtagagctatttactcgattgttgcagacattggcagagtaagaaatagtcaattttg 41014437  T
Q  207 aatgaacacagtgtaaccctctttcaaatatccaactgacaaaaccaagggataacaaatccttat 272  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41014438 aatgaacacactgtaaccctctttcaaatatccacctgacaaaaccaagggataacaaatccttat 41014503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 263 - 390
Target Start/End: Complemental strand, 1605393 - 1605267
Alignment:
Q  263 aaatccttatccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccac 362  Q
    ||||||||||| |||||||||||||||||| ||| ||||| | || ||||  |||||||||||||||||||||||||||||||||| |||| ||||||||    
T  1605393 aaatccttatcattattatctaatcctaaactacgatgcatacaactattgtaaaaccctaatccttgatttagagcgggaaaattatgca-ttaaccac 1605295  T
Q  363 atttaatgccatttttgaatttcaaatc 390  Q
    | |||||| |||||||||||||||||||    
T  1605294 acttaatgacatttttgaatttcaaatc 1605267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 265 - 400
Target Start/End: Original strand, 11142697 - 11142831
Alignment:
Q  265 atccttatccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacat 364  Q
    |||||||||||||||||||||||||||| ||||||||||||||  ||| ||||||||||||| |||  || |||||||||||||||  | ||||||||||    
T  11142697 atccttatccttattatctaatcctaaactacaatgcacataacaattgcaaaaccctaatcattggctttgagcgggaaaattgt-tatttaaccacat 11142795  T
Q  365 ttaatgccatttttgaatttcaaatccagtaccctt 400  Q
    |||||| |||||||||||||||||||  ||||||||    
T  11142796 ttaatggcatttttgaatttcaaatcatgtaccctt 11142831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 271 - 400
Target Start/End: Complemental strand, 1662654 - 1662526
Alignment:
Q  271 atccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatcctt-gatttagagcgggaaaattgtgcacttaaccacatttaat 369  Q
    |||||||||||||||||||||| ||||||||||| ||  ||| |||||||||||||||| ||||| |||||||||||||||| | ||||||| |||||||    
T  1662654 atccttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatccttagattt-gagcgggaaaattgtg-atttaaccatatttaat 1662557  T
Q  370 gccatttttgaatttcaaatccagtaccctt 400  Q
    | |||||||||||||||||||  ||||||||    
T  1662556 gtcatttttgaatttcaaatcatgtaccctt 1662526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 4e-47; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 265 - 389
Target Start/End: Complemental strand, 4328906 - 4328782
Alignment:
Q  265 atccttatccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacat 364  Q
    |||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  4328906 atccttatccttattatctaatcctaaagtacaatgcacacaactttttcaaaaccctaatccttggttttgagcgggaaaattgtgcacttaaccacat 4328807  T
Q  365 ttaatgccatttttgaatttcaaat 389  Q
    ||||||| | |||||||||||||||    
T  4328806 ttaatgctaattttgaatttcaaat 4328782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 264 - 400
Target Start/End: Original strand, 35161947 - 35162082
Alignment:
Q  264 aatccttatccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccaca 363  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||  ||| |||||||||||||||||  || ||||||||||||| || | ||||||| |    
T  35161947 aatccttatccttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatccttggatttgagcgggaaaattatg-atttaaccaaa 35162045  T
Q  364 tttaatgccatttttgaatttcaaatccagtaccctt 400  Q
    ||||||| |||||||||||||||||||  ||||||||    
T  35162046 tttaatggcatttttgaatttcaaatcatgtaccctt 35162082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 271 - 400
Target Start/End: Complemental strand, 29395519 - 29395391
Alignment:
Q  271 atccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatg 370  Q
    |||||||||||||||||||||| ||||||||||| ||  ||| ||||||||||||| |||  || |||||||||||||||| | ||||||||||||||||    
T  29395519 atccttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatcattggctttgagcgggaaaattgtg-atttaaccacatttaatg 29395421  T
Q  371 ccatttttgaatttcaaatccagtaccctt 400  Q
     |||||||||||||||||||  ||||||||    
T  29395420 acatttttgaatttcaaatcatgtaccctt 29395391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 271 - 400
Target Start/End: Complemental strand, 30410923 - 30410795
Alignment:
Q  271 atccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatg 370  Q
    |||||||||||||||| ||||| ||||||||||| ||  ||| |||||||||||||||||  || |||||||||||||||| | ||||||||||||||||    
T  30410923 atccttattatctaattctaaactacaatgcacacaacaattgcaaaaccctaatccttggctttgagcgggaaaattgtg-atttaaccacatttaatg 30410825  T
Q  371 ccatttttgaatttcaaatccagtaccctt 400  Q
     |||||||||||||||||||  ||||||||    
T  30410824 gcatttttgaatttcaaatcatgtaccctt 30410795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 263 - 346
Target Start/End: Original strand, 41866976 - 41867059
Alignment:
Q  263 aaatccttatccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaa 346  Q
    ||||||||||||||||| ||||||||||| |||||||||||| |||   |  |||||||||||||||||||| |||||||||||    
T  41866976 aaatccttatccttattttctaatcctaatgtacaatgcacacaagacctaaaaaaccctaatccttgattttgagcgggaaaa 41867059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 271 - 346
Target Start/End: Complemental strand, 28549434 - 28549359
Alignment:
Q  271 atccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaa 346  Q
    ||||||||| ||||||||||| |||||||||||| |||   |  |||||||||||||||||||| |||||||||||    
T  28549434 atccttattttctaatcctaatgtacaatgcacacaagacctaaaaaaccctaatccttgattttgagcgggaaaa 28549359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 3e-38; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 275 - 810
Target Start/End: Original strand, 34575602 - 34576145
Alignment:
Q  275 ttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatgccat 374  Q
    |||||||||||||||||  ||||||||||| ||   || |||||||||||||||||  || ||||||||||| |||| | | |||||||||||||  |||    
T  34575602 ttattatctaatcctaacctacaatgcacacaacatttgcaaaaccctaatccttgcatttgagcgggaaaa-tgtg-attaaaccacatttaattgcat 34575699  T
Q  375 ttttgaatttcaaatccagtacccttca--acctagcgctctaaacaatccttcatgcccattaaatgtggcttttcatttttcaagactctttgcgccg 472  Q
    ||||||||||||||||| |||||||| |  || ||||||  ||||| |||| ||| | ||||||||||     |||  |||||| ||||| |||||   |    
T  34575700 ttttgaatttcaaatcctgtacccttaatgacatagcgcggtaaactatccctcacggccattaaatgcactctttagtttttccagactatttgcatgg 34575799  T
Q  473 attctgcctatgaatatgaagagtctctaaattgctaatca--atgtttctaatttttcaatataacagttaccaatggaatgcacaatatgattgtata 570  Q
    | ||||   |||| |||||||||||||||  ||| ||||||  ||||||| || ||| |||| |||||||||||| |   |||||| |||||||||||||    
T  34575800 aatctgtacatgactatgaagagtctctacgttggtaatcaatatgtttccaactttccaatgtaacagttaccatttccatgcaccatatgattgtata 34575899  T
Q  571 aatatgaatcacctt--tctgatttcccatcacttccaatctctcccattctgtcatggcacacaataacatccagacctttttgtcataccagatgtta 668  Q
    ||||||| | |  ||    ||  ||||||||||||||||||  ||||||| || |||||   | ||||| |||||||  ||||||||| |||||||||||    
T  34575900 aatatgattgattttggcatgcgttcccatcacttccaatc-gtcccattttgccatgg---aaaataatatccagaattttttgtcacaccagatgtta 34575995  T
Q  669 acggccatgtattacctttcatcttacatcattttgtattctgaatttgcgttttggtttgactatc--------tatgaataacacgcttattatgttg 760  Q
    |  | |||||||||||||   ||| |||||||||||| || |||||   ||||||   |||||||||        ||||||||||||| || ||||||||    
T  34575996 ataggcatgtattaccttaattctgacatcattttgttttttgaataatcgttttttattgactatctatgtatttatgaataacacgtttcttatgttg 34576095  T
Q  761 ttatctgtttcttgcagcacccttggatccaaatccattaactgacatag 810  Q
     ||| | ||| ||||||| ||||||||||| |||||||||||||| ||||    
T  34576096 gtatatttttgttgcagcgcccttggatcccaatccattaactgatatag 34576145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 271 - 390
Target Start/End: Original strand, 13946647 - 13946765
Alignment:
Q  271 atccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatg 370  Q
    |||||||||||||||||||||| ||||||||||| ||  ||| ||||||||||||||||| ||| |||||||||||||||| | ||||||||||||||||    
T  13946647 atccttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatccttggttttgagcgggaaaattgtg-atttaaccacatttaatg 13946745  T
Q  371 ccatttttgaatttcaaatc 390  Q
      ||||||||||||||||||    
T  13946746 ggatttttgaatttcaaatc 13946765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 279 - 346
Target Start/End: Original strand, 33865605 - 33865671
Alignment:
Q  279 tatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaa 346  Q
    ||||||||||||| |||||||||||| ||| |  | |||||||||||| |||||||||||||||||||    
T  33865605 tatctaatcctaatgtacaatgcacacaag-acctaaaaaccctaatctttgatttagagcgggaaaa 33865671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 265 - 391
Target Start/End: Original strand, 20389908 - 20390033
Alignment:
Q  265 atccttatccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacat 364  Q
    |||||||||||||||||||||||||||| ||||||||| | ||    |  ||||||||||||||   ||| ||||||||||||| |||   | ||| ||     
T  20389908 atccttatccttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaat-acctcac 20390006  T
Q  365 ttaatgccatttttgaatttcaaatcc 391  Q
    |||||||||||||  ||||||||||||    
T  20390007 ttaatgccattttcaaatttcaaatcc 20390033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 8e-36; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 271 - 400
Target Start/End: Original strand, 4865120 - 4865248
Alignment:
Q  271 atccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatg 370  Q
    |||||||||||||||||||||| ||||||||||| ||  ||| ||||||||||||||||| ||| |||||||||||||||| | ||||||||||||||||    
T  4865120 atccttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatccttggttttgagcgggaaaattgtg-atttaaccacatttaatg 4865218  T
Q  371 ccatttttgaatttcaaatccagtaccctt 400  Q
     |||||||||||||||||||  ||||||||    
T  4865219 gcatttttgaatttcaaatcatgtaccctt 4865248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 269 - 400
Target Start/End: Complemental strand, 55041584 - 55041454
Alignment:
Q  269 ttatccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaa 368  Q
    |||||||||||||||||||||||| ||||||||||| ||  ||| |||||||||||||||||  || |||||||||||||||| | ||||||||||||||    
T  55041584 ttatccttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatccttggctttgagcgggaaaattgtg-atttaaccacatttaa 55041486  T
Q  369 tgccatttttgaatttcaaatccagtaccctt 400  Q
    || |||||||||||||||||||  ||||||||    
T  55041485 tggcatttttgaatttcaaatcatgtaccctt 55041454  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 271 - 366
Target Start/End: Complemental strand, 30766108 - 30766014
Alignment:
Q  271 atccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacattt 366  Q
    |||||||||||||||||||||| ||||||||||| || |  |  ||||||||||||  |||||||||||||||||||| ||| |||||| ||||||    
T  30766108 atccttattatctaatcctaaactacaatgcacacaaatcatctaaaaccctaatctatgatttagagcgggaaaattttgc-cttaactacattt 30766014  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 279 - 346
Target Start/End: Complemental strand, 23217113 - 23217047
Alignment:
Q  279 tatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaa 346  Q
    |||| |||||||| |||||||||||| ||| |  | ||||||||||||||||||||||||||||||||    
T  23217113 tatccaatcctaatgtacaatgcacagaag-acctaaaaaccctaatccttgatttagagcgggaaaa 23217047  T

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Target: chr2 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 271 - 545
Target Start/End: Original strand, 17830842 - 17831116
Alignment:
Q  271 atccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatg 370  Q
    ||||||||||||||||| |||  ||||||||||| ||   || |||||||||||||||||  || |||||||||||| ||| | ||||||| |||||||     
T  17830842 atccttattatctaatcataacctacaatgcacacaacatttgcaaaaccctaatccttgcatttgagcgggaaaat-gtg-atttaaccatatttaatt 17830939  T
Q  371 ccatttttgaatttcaaatccagtacccttca--acctagcgctctaaacaatccttcatgcccattaaatgtggcttttcatttttcaagactctttgc 468  Q
     ||||||||||||||||||||  ||||||| |  || ||||||  ||||| |||| ||| | ||||||||||     |||  |||||| | ||| |||||    
T  17830940 gcatttttgaatttcaaatcctatacccttaatgacatagcgcggtaaactatccctcacggccattaaatgcactctttagtttttccaaactatttgc 17831039  T
Q  469 gccgattctgcctatgaatatgaagagtctctaaattgctaatcaatgtttctaatttttcaatataacagttacca 545  Q
        | ||||   |||| ||||||||||||||| ||||||||||||||||||  | ||| ||||  |||||||||||    
T  17831040 atgaaatctgtacatgactatgaagagtctctacattgctaatcaatgtttcctactttccaatgaaacagttacca 17831116  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 269 - 346
Target Start/End: Original strand, 34703765 - 34703842
Alignment:
Q  269 ttatccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaa 346  Q
    ||||||||||| ||||||||||| |||||||||||| |||   |  |||||||||||||||||||| |||||||||||    
T  34703765 ttatccttattttctaatcctaatgtacaatgcacacaagacctaaaaaaccctaatccttgattttgagcgggaaaa 34703842  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 274 - 346
Target Start/End: Complemental strand, 43046345 - 43046273
Alignment:
Q  274 cttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaa 346  Q
    |||||||| ||||||||| |||||||| | | ||| ||||||||||||||| ||| ||||| |||||| ||||    
T  43046345 cttattatttaatcctaatgtacaatgtaaacaagcatttcaaaaccctaaacctagattttgagcggaaaaa 43046273  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 265 - 345
Target Start/End: Complemental strand, 6309246 - 6309166
Alignment:
Q  265 atccttatccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaa 345  Q
    ||||||||||||||||||||||||||| |||||||| | | |||  |||||||||| ||| ||| ||||| ||||||||||    
T  6309246 atccttatccttattatctaatcctaatgtacaatgtaaacaagcctttcaaaaccttaaacctagattttgagcgggaaa 6309166  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 279 - 346
Target Start/End: Original strand, 11074870 - 11074936
Alignment:
Q  279 tatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaa 346  Q
    ||||||||||||| |||||||||||| ||| |  | ||||||||||||||||||||||||||||||||    
T  11074870 tatctaatcctaatgtacaatgcacacaag-acctaaaaaccctaatccttgatttagagcgggaaaa 11074936  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 274 - 400
Target Start/End: Original strand, 32444477 - 32444602
Alignment:
Q  274 cttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatgcca 373  Q
    ||||||||||||||||||| ||||||||| | ||    || ||||||||||||||   ||| |||||||||| |  |||  |||||| || |||||||||    
T  32444477 cttattatctaatcctaaactacaatgcaaacaaaacattaaaaaccctaatcctaagttttgagcgggaaactaatgct-ttaacctcacttaatgcca 32444575  T
Q  374 tttttgaatttcaaatccagtaccctt 400  Q
    |||||||||||||||||| ||| ||||    
T  32444576 tttttgaatttcaaatcctgtatcctt 32444602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 265 - 302
Target Start/End: Complemental strand, 31112505 - 31112468
Alignment:
Q  265 atccttatccttattatctaatcctaaagtacaatgca 302  Q
    |||||||||||||||||| |||||||||||||||||||    
T  31112505 atccttatccttattatcgaatcctaaagtacaatgca 31112468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 274 - 400
Target Start/End: Original strand, 11178361 - 11178486
Alignment:
Q  274 cttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgatttagagcgggaaaattgtgcacttaaccacatttaatgcca 373  Q
    ||||||||||||||||||| ||||||||| | ||    |  ||||||||||||||   ||| ||| |||||| |  |||  |||||| || |||||||||    
T  11178361 cttattatctaatcctaaactacaatgcaaacaaaacatcaaaaaccctaatcctatgttttgagtgggaaactaatgct-ttaacctcacttaatgcca 11178459  T
Q  374 tttttgaatttcaaatccagtaccctt 400  Q
    |||||||||||||||||  ||||||||    
T  11178460 tttttgaatttcaaatcatgtaccctt 11178486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 265 - 300
Target Start/End: Original strand, 5126 - 5161
Alignment:
Q  265 atccttatccttattatctaatcctaaagtacaatg 300  Q
    ||||||||||||||||||||||||||| ||||||||    
T  5126 atccttatccttattatctaatcctaatgtacaatg 5161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 269 - 302
Target Start/End: Complemental strand, 37720093 - 37720060
Alignment:
Q  269 ttatccttattatctaatcctaaagtacaatgca 302  Q
    |||||||||||||||||||||||| |||||||||    
T  37720093 ttatccttattatctaatcctaaactacaatgca 37720060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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