View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2800R-Insertion-4 (Length: 575)
Name: NF2800R-Insertion-4
Description: NF2800R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2800R-Insertion-4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 8 - 575
Target Start/End: Complemental strand, 43152376 - 43151807
Alignment:
| Q |
8 |
aaaatttcactatgtaaaaacatattttcatattatatcatatccatcaggggagttctcatatgcaatccacaaattgtatgtgtacatggatatcaac |
107 |
Q |
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| T |
43152376 |
aaaatttcactatgtaaaaacacattttcatattatatcatatccatcggggaagttctcatatgcaatccacaaattgtatgtgtacatggatatcaac |
43152277 |
T |
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| Q |
108 |
tatcaatacnnnnnnngattacaacatggttgtcagactcgcaggtcaactcatagacttctaggagcttacgggtctaggatgccaaaatgagttgacg |
207 |
Q |
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| T |
43152276 |
tatcaatacaaaaaaagattacaacatggttgtcagactcgcaggtcaactcatagacttctaggagcttacgggtctaggatgccaaaatgagttgacg |
43152177 |
T |
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| Q |
208 |
cgcactgatattcattttcattgtagactcggtcaaatcggatagactcacaagtctgatgcatgttcacgagttcaatgtaatttttgaagaaaaaaca |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
43152176 |
cgcactgatattcattttcattgtagactcggtcaaatcggatagactcacaagtctgatgcaagctcacgagttcaatgtaatttttgaagaaaaaaca |
43152077 |
T |
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| Q |
308 |
aaacatgttggatctcgtcgtttcactcaaaattaaaaaccctaaaagtaagttagaagacacgtccttttcgtttagaagttagaaaactcaaagaaaa |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43152076 |
aaacatgttggatctcgtcgtttcactcaaaattaaaaaccctaaaagtaagttagaagacacgtccttttcgtttagaagttagaaaactcaaagaaaa |
43151977 |
T |
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| Q |
408 |
acatacatttctc--tgtcttgtgttcatgctacatgtttcttgttctttctggttcgctttgcacatttcttgtcgtttggcatttcaactagcacatc |
505 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43151976 |
acatacatttctctttgtctcgtgttcatgctacatgtttcttgttctttctggttcgctttgcacatttcttgtcgtttggcatttcaactagcacatc |
43151877 |
T |
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| Q |
506 |
tctctcatgtccgcacacacatgtctctcacatttgttcgtctctcggagaatcacatttgttcccttgg |
575 |
Q |
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| T |
43151876 |
tctctcatgtccgcacacacatgtctctcacatttgttcgtctctcggagaatcacatttgttcccttgg |
43151807 |
T |
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