View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2800R-Insertion-5 (Length: 530)
Name: NF2800R-Insertion-5
Description: NF2800R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2800R-Insertion-5 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 409; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 110 - 530
Target Start/End: Original strand, 1394933 - 1395353
Alignment:
| Q |
110 |
aggatacaataatctaaaatatgatatcgaaacgacatttgatacttagatatttaatatttctgacggaaacatcaacaacttacaattcataacggct |
209 |
Q |
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| T |
1394933 |
aggatacaataatctaaaatatgatatcgaaacgacatttgatacttagatatttaatatttctgacggaaacatcaataacttacaattcataacggct |
1395032 |
T |
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| Q |
210 |
acaagtcacaatacttggcttgactagtaaatatagttcaagactttgatattttattcatctcaaaacatactaatttaatatacaagattttggatta |
309 |
Q |
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| T |
1395033 |
acaagtcacaatacttggcttgactagtaaatatagttcaagactttgatattttattcatctcaaaacatactaatttaatatacaagattttggatta |
1395132 |
T |
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| Q |
310 |
taaatagttcaagacttataattatgcataacataaacacaattatgcgctcaatgtcacattttgtttgaaacttcacaaaagattaattataatataa |
409 |
Q |
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| T |
1395133 |
taaatagttcaagacttataattatgcataacataaacacaattatgcgctcaatgtcacattttgtttgaaacttcacaaaagattaattataatataa |
1395232 |
T |
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| Q |
410 |
acatcagacgatagttcatagtagattactcagccacatccttacctttgtatacatgttcatctaaaaatataaatggggatgagatctacttactcgt |
509 |
Q |
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| T |
1395233 |
acatcagacgatagttcatagtagattactcagccatatccttacctttgtatacatgttcatctaaaaatataaatggggatgagatctacttagtcgt |
1395332 |
T |
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| Q |
510 |
ggagtttctactaatttatag |
530 |
Q |
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| T |
1395333 |
ggagtttctactaatttatag |
1395353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 127 - 284
Target Start/End: Original strand, 1406177 - 1406332
Alignment:
| Q |
127 |
aatatgatatcgaaacgacatttgatacttagatatttaatatttctgacggaaacatcaacaacttacaattcataacggctacaagtcacaatacttg |
226 |
Q |
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| T |
1406177 |
aatatgatatcgaaacgacatttgatacttagatatttaatattactgacggaaacatcaacaacttacaattcataacggctacaagtcacaatacttg |
1406276 |
T |
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| Q |
227 |
gcttgactagtaaatatagttcaagactttgatattttattcatctcaaaacatacta |
284 |
Q |
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| T |
1406277 |
gcttgactagtaa--atagttcaagactttgatattttattcatctcaaaacatacta |
1406332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 433 - 530
Target Start/End: Original strand, 1406345 - 1406442
Alignment:
| Q |
433 |
gattactcagccacatccttacctttgtatacatgttcatctaaaaatataaatggggatgagatctacttactcgtggagtttctactaatttatag |
530 |
Q |
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| T |
1406345 |
gattactcagccatatccttacctttgtatacatgttcatctaaaaatataaatggggatgagatctacttactcatggagtttctactaatttatag |
1406442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 1406068 - 1406130
Alignment:
| Q |
9 |
ataatgacgtgcaaatttgttaaacacgcctcgggacaaatttcgctacatatagcaccactg |
71 |
Q |
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| T |
1406068 |
ataatgacgtgcaaatttgttaaacacgcctcgggacaaatttcgctacatatagcaccactg |
1406130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 1389153 - 1389202
Alignment:
| Q |
22 |
aatttgttaaacacgcctcgggacaaatttcgctacatatagcaccactg |
71 |
Q |
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| T |
1389153 |
aatttgttaaacacgcctcgggacaaatttcgctacatatagcaccactg |
1389202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 113 - 326
Target Start/End: Complemental strand, 42409350 - 42409130
Alignment:
| Q |
113 |
atacaataatctaaaatatgatatcgaaacgacatttgatacttagatatttaatatttctgacggaaacatcaacaacttacaattcataacggctaca |
212 |
Q |
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| T |
42409350 |
atacaataatctagaatatgatatcgaactgatatttaatacttggatatttaatattatagactgaaatatcaacaacttccaatttgtaacggctaag |
42409251 |
T |
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| Q |
213 |
agtcacaatacttggcttgactagtaaatatagttcaagac---tttgatatttta-----ttcatctcaaaacatactaatttaatatacaagattttg |
304 |
Q |
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| T |
42409250 |
agttacaatacttagcttgactagtaaa-gtagttcaagactaatttggtattttacattgttcgtctcaaaacataataacctaatatacaacattctt |
42409152 |
T |
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| Q |
305 |
gattataaatagttcaagactt |
326 |
Q |
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| T |
42409151 |
gactatcaataattcaagactt |
42409130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 502
Target Start/End: Complemental strand, 42408993 - 42408938
Alignment:
| Q |
446 |
catccttacctttgtatacatgttcatctaaaaatataaatggggatgagatctact |
502 |
Q |
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| T |
42408993 |
catccttaccattgaatacatgttcatctaaaaa-ataaattgagatgagatttact |
42408938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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