View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2800R-Insertion-6 (Length: 415)

Name: NF2800R-Insertion-6
Description: NF2800R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2800R-Insertion-6
NF2800R-Insertion-6
[»] chr3 (36 HSPs)
chr3 (8-335)||(36868185-36868512)
chr3 (10-119)||(36851686-36851794)
chr3 (10-131)||(37371192-37371312)
chr3 (355-415)||(36868558-36868618)
chr3 (10-131)||(36862138-36862258)
chr3 (258-326)||(50960844-50960912)
chr3 (216-326)||(21200553-21200661)
chr3 (259-326)||(49503766-49503833)
chr3 (258-326)||(39600892-39600960)
chr3 (258-326)||(54128381-54128449)
chr3 (258-326)||(52138803-52138871)
chr3 (258-313)||(39235154-39235209)
chr3 (252-326)||(26490318-26490392)
chr3 (270-327)||(29817506-29817563)
chr3 (261-326)||(41842725-41842790)
chr3 (258-326)||(38430851-38430919)
chr3 (258-325)||(42510227-42510292)
chr3 (258-326)||(43694976-43695044)
chr3 (259-326)||(5168835-5168902)
chr3 (259-326)||(36820173-36820240)
chr3 (263-314)||(45289307-45289358)
chr3 (259-326)||(47233808-47233875)
chr3 (260-322)||(3987054-3987116)
chr3 (258-324)||(19737002-19737068)
chr3 (258-324)||(19757905-19757971)
chr3 (261-307)||(48734349-48734395)
chr3 (260-326)||(49841622-49841688)
chr3 (264-326)||(54365194-54365255)
chr3 (261-326)||(51447924-51447989)
chr3 (363-411)||(29919234-29919282)
chr3 (363-411)||(29928586-29928634)
chr3 (363-411)||(29968387-29968435)
chr3 (363-411)||(29977740-29977788)
chr3 (278-326)||(34719303-34719351)
chr3 (258-326)||(38060434-38060502)
chr3 (363-415)||(49841537-49841589)
[»] chr7 (53 HSPs)
chr7 (10-128)||(17615648-17615765)
chr7 (259-326)||(12966025-12966092)
chr7 (263-323)||(7189442-7189502)
chr7 (262-326)||(42187473-42187537)
chr7 (264-326)||(38920797-38920859)
chr7 (260-326)||(40169652-40169718)
chr7 (251-313)||(41948532-41948594)
chr7 (260-326)||(47848677-47848743)
chr7 (261-326)||(27021906-27021971)
chr7 (261-326)||(28020967-28021032)
chr7 (258-326)||(19262644-19262712)
chr7 (258-326)||(36101976-36102044)
chr7 (250-326)||(36514410-36514486)
chr7 (259-326)||(12841487-12841554)
chr7 (259-326)||(13859220-13859287)
chr7 (259-326)||(34869423-34869490)
chr7 (259-326)||(35906413-35906480)
chr7 (259-326)||(49029279-49029346)
chr7 (261-326)||(2885936-2886001)
chr7 (259-308)||(24549905-24549954)
chr7 (260-305)||(35713719-35713764)
chr7 (260-304)||(6420703-6420747)
chr7 (258-322)||(7273046-7273110)
chr7 (258-326)||(28628144-28628212)
chr7 (258-322)||(30200174-30200238)
chr7 (259-326)||(6374871-6374938)
chr7 (260-323)||(7220750-7220813)
chr7 (259-326)||(11593963-11594030)
chr7 (259-326)||(22349623-22349690)
chr7 (259-326)||(31005226-31005293)
chr7 (259-326)||(33072955-33073022)
chr7 (259-326)||(39906582-39906649)
chr7 (259-326)||(43281677-43281744)
chr7 (259-326)||(45836692-45836759)
chr7 (231-326)||(46989906-46990001)
chr7 (260-326)||(18605359-18605425)
chr7 (260-326)||(18637565-18637631)
chr7 (260-326)||(18650999-18651065)
chr7 (260-326)||(25579290-25579356)
chr7 (260-326)||(43282411-43282477)
chr7 (259-321)||(44855384-44855446)
chr7 (260-326)||(46356069-46356135)
chr7 (259-308)||(38135424-38135473)
chr7 (224-305)||(48202879-48202960)
chr7 (250-326)||(5335923-5335999)
chr7 (250-322)||(14593772-14593844)
chr7 (278-326)||(26742127-26742175)
chr7 (363-415)||(30200263-30200315)
chr7 (259-323)||(33350018-33350082)
chr7 (258-326)||(36136767-36136835)
chr7 (259-326)||(37617947-37618015)
chr7 (258-326)||(40830226-40830294)
chr7 (363-415)||(48736203-48736255)
[»] chr4 (40 HSPs)
chr4 (258-325)||(29398822-29398889)
chr4 (261-326)||(31459033-31459098)
chr4 (250-319)||(42285903-42285972)
chr4 (251-324)||(46715576-46715649)
chr4 (250-326)||(35555850-35555926)
chr4 (250-326)||(51252664-51252740)
chr4 (260-322)||(50662394-50662457)
chr4 (260-326)||(28236186-28236252)
chr4 (260-326)||(54470210-54470276)
chr4 (250-323)||(42639223-42639296)
chr4 (258-314)||(47611742-47611798)
chr4 (231-326)||(31339540-31339634)
chr4 (259-326)||(31960026-31960093)
chr4 (259-326)||(43433927-43433994)
chr4 (259-326)||(52569727-52569794)
chr4 (259-326)||(53707797-53707864)
chr4 (250-324)||(38570950-38571024)
chr4 (260-313)||(30853373-30853426)
chr4 (258-326)||(436232-436300)
chr4 (250-322)||(33709931-33710003)
chr4 (278-326)||(38266149-38266197)
chr4 (258-326)||(41192839-41192907)
chr4 (261-313)||(44860862-44860914)
chr4 (270-322)||(49987435-49987487)
chr4 (258-314)||(50471541-50471597)
chr4 (259-326)||(33227212-33227279)
chr4 (259-326)||(48622755-48622822)
chr4 (260-326)||(1793463-1793529)
chr4 (260-326)||(20591513-20591579)
chr4 (260-326)||(28497493-28497558)
chr4 (259-324)||(4440858-4440923)
chr4 (261-326)||(30621418-30621483)
chr4 (261-326)||(37797855-37797920)
chr4 (258-326)||(10209037-10209105)
chr4 (251-291)||(13805469-13805509)
chr4 (363-411)||(20105775-20105823)
chr4 (258-326)||(31403229-31403295)
chr4 (270-326)||(42293472-42293528)
chr4 (149-209)||(44641936-44641996)
chr4 (149-193)||(44686700-44686744)
[»] scaffold0018 (2 HSPs)
scaffold0018 (257-326)||(44078-44147)
scaffold0018 (259-326)||(31471-31538)
[»] chr1 (36 HSPs)
chr1 (258-326)||(5338727-5338795)
chr1 (258-326)||(27848016-27848084)
chr1 (260-326)||(48431619-48431685)
chr1 (258-326)||(35828761-35828829)
chr1 (259-326)||(34792561-34792628)
chr1 (260-322)||(43423726-43423788)
chr1 (265-326)||(14226047-14226108)
chr1 (261-326)||(40416374-40416439)
chr1 (258-326)||(1661433-1661501)
chr1 (258-326)||(2544602-2544670)
chr1 (250-326)||(3819059-3819135)
chr1 (259-326)||(1210748-1210815)
chr1 (251-314)||(8343062-8343125)
chr1 (259-326)||(9509321-9509388)
chr1 (263-326)||(38868885-38868948)
chr1 (259-326)||(51602059-51602126)
chr1 (258-324)||(13827928-13827994)
chr1 (261-326)||(8671921-8671986)
chr1 (363-415)||(4379931-4379983)
chr1 (258-322)||(32404737-32404801)
chr1 (363-415)||(52442808-52442860)
chr1 (259-326)||(15085937-15086004)
chr1 (259-326)||(22090099-22090166)
chr1 (251-326)||(23791848-23791923)
chr1 (259-326)||(39140523-39140590)
chr1 (259-322)||(51440977-51441040)
chr1 (258-308)||(10569278-10569328)
chr1 (260-326)||(32231167-32231233)
chr1 (261-326)||(4380016-4380081)
chr1 (258-327)||(36340014-36340083)
chr1 (367-415)||(9599702-9599750)
chr1 (258-314)||(16822233-16822289)
chr1 (264-308)||(17815493-17815537)
chr1 (258-326)||(19908250-19908318)
chr1 (363-415)||(34827406-34827458)
chr1 (263-319)||(51812535-51812591)
[»] chr8 (27 HSPs)
chr8 (231-326)||(29700279-29700374)
chr8 (262-326)||(9695634-9695698)
chr8 (260-314)||(35643814-35643868)
chr8 (263-324)||(13171865-13171926)
chr8 (261-326)||(45512709-45512774)
chr8 (259-326)||(12491350-12491417)
chr8 (260-326)||(18474173-18474239)
chr8 (260-314)||(41971991-41972045)
chr8 (258-291)||(79081-79114)
chr8 (251-327)||(12611537-12611613)
chr8 (262-314)||(16917199-16917251)
chr8 (258-314)||(30748472-30748528)
chr8 (270-326)||(41444549-41444605)
chr8 (258-326)||(45419240-45419308)
chr8 (259-326)||(2776441-2776508)
chr8 (259-322)||(36545156-36545219)
chr8 (263-326)||(36565457-36565520)
chr8 (149-191)||(16917293-16917335)
chr8 (364-414)||(36069570-36069620)
chr8 (258-326)||(36395160-36395229)
chr8 (261-326)||(40813327-40813392)
chr8 (258-326)||(43904876-43904947)
chr8 (258-314)||(17491832-17491888)
chr8 (363-415)||(28300416-28300468)
chr8 (258-326)||(36143368-36143436)
chr8 (258-326)||(39946860-39946928)
chr8 (258-326)||(44681250-44681318)
[»] chr5 (31 HSPs)
chr5 (251-326)||(33667219-33667294)
chr5 (259-326)||(31636132-31636199)
chr5 (256-326)||(28676598-28676668)
chr5 (216-314)||(42199301-42199399)
chr5 (260-326)||(43558040-43558106)
chr5 (258-326)||(43475243-43475311)
chr5 (259-326)||(4496387-4496454)
chr5 (258-326)||(41833793-41833863)
chr5 (260-326)||(1287792-1287858)
chr5 (261-326)||(1275267-1275332)
chr5 (261-326)||(15489706-15489771)
chr5 (258-326)||(18351118-18351187)
chr5 (250-326)||(2712947-2713023)
chr5 (363-415)||(21952277-21952329)
chr5 (258-326)||(34273030-34273098)
chr5 (259-326)||(14665717-14665784)
chr5 (259-326)||(16347590-16347657)
chr5 (259-326)||(24178513-24178580)
chr5 (259-326)||(28977071-28977138)
chr5 (259-326)||(38684970-38685037)
chr5 (276-326)||(14667766-14667816)
chr5 (147-208)||(3775195-3775256)
chr5 (251-308)||(6889014-6889071)
chr5 (363-400)||(8492627-8492664)
chr5 (250-327)||(14749309-14749386)
chr5 (278-326)||(27896-27944)
chr5 (258-326)||(79516-79584)
chr5 (250-326)||(6859384-6859460)
chr5 (259-319)||(12492596-12492656)
chr5 (265-317)||(21193858-21193910)
chr5 (260-308)||(38578734-38578782)
[»] chr2 (23 HSPs)
chr2 (252-326)||(8180783-8180857)
chr2 (260-318)||(13240958-13241016)
chr2 (258-326)||(12141547-12141615)
chr2 (270-326)||(19024183-19024239)
chr2 (259-326)||(43238305-43238372)
chr2 (252-326)||(25834684-25834758)
chr2 (277-326)||(18958910-18958959)
chr2 (250-299)||(42543265-42543314)
chr2 (363-415)||(9556672-9556724)
chr2 (258-326)||(43752158-43752226)
chr2 (259-326)||(11992320-11992387)
chr2 (259-326)||(36183454-36183521)
chr2 (260-326)||(38434954-38435021)
chr2 (259-326)||(38452897-38452964)
chr2 (259-326)||(45367837-45367904)
chr2 (260-326)||(2610591-2610657)
chr2 (258-308)||(3481162-3481212)
chr2 (260-321)||(14197375-14197437)
chr2 (260-305)||(9556582-9556627)
chr2 (273-326)||(11412724-11412777)
chr2 (258-306)||(12026216-12026264)
chr2 (363-414)||(37393470-37393522)
chr2 (258-322)||(41763253-41763317)
[»] chr6 (13 HSPs)
chr6 (258-326)||(33084061-33084129)
chr6 (258-326)||(14389379-14389446)
chr6 (260-314)||(9593919-9593973)
chr6 (155-209)||(21870201-21870255)
chr6 (147-209)||(31818623-31818685)
chr6 (270-306)||(33997765-33997801)
chr6 (259-326)||(5258360-5258427)
chr6 (258-321)||(24665818-24665881)
chr6 (259-326)||(28085379-28085446)
chr6 (261-326)||(2079343-2079408)
chr6 (265-314)||(4948529-4948578)
chr6 (265-314)||(4955500-4955549)
chr6 (270-326)||(8364575-8364631)
[»] scaffold0325 (1 HSPs)
scaffold0325 (261-325)||(11802-11866)
[»] scaffold0570 (1 HSPs)
scaffold0570 (259-326)||(1160-1227)


Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 8 - 335
Target Start/End: Original strand, 36868185 - 36868512
Alignment:
Q  8 aaaacaaagaggaactcattgccatggcaaagggagattaactcaataaaggtttgcttccttaatgatctaaatcaccatttgtggagattttgcatcc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36868185 aaaacaaagaggaactcattgccatggcaaagggagattaactcaataaaggtttgcttccttaatgatctaaatcaccatttgtggagattttgcatcc 36868284  T
Q  108 ttgacttgattaacttgttttatttaaccaaaaccaagccttatagcttttcaaggtcttcttctacctttagtgatttaactactctccatattatcta 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36868285 ttgacttgattaacttgttttatttaaccaaaaccaagccttatagcttttcaaggtcttcttctacctttagtgatttaactactctccatattatcta 36868384  T
Q  208 ctattttaactactgtccatattatctactatccttacggctgaatccaaaggtcttctctatacatgcccaaaccacctaagcttactttccaccatct 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||    
T  36868385 ctattttaactactgtccatattatctactatccttacggctgaatccaaaggtcttctttatatatgcccaaaccacctaagcctactttccaccatct 36868484  T
Q  308 tctctaccataggtgctacataccccaa 335  Q
    ||||||||||||||||||||||||||||    
T  36868485 tctctaccataggtgctacataccccaa 36868512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 10 - 119
Target Start/End: Original strand, 36851686 - 36851794
Alignment:
Q  10 aacaaagaggaactcattgccatggcaaagggagattaactcaataaaggtttgcttccttaatgatctaaatcaccatttgtggagattttgcatcctt 109  Q
    ||||||||||||||| ||||||||||||||||| || ||||||| |||||||||||| ||| |||||| ||||||| ||||||||||||||||||| |||    
T  36851686 aacaaagaggaactccttgccatggcaaagggacatcaactcaagaaaggtttgctt-cttgatgatcgaaatcacaatttgtggagattttgcatgctt 36851784  T
Q  110 gacttgatta 119  Q
    ||||||||||    
T  36851785 gacttgatta 36851794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 10 - 131
Target Start/End: Complemental strand, 37371312 - 37371192
Alignment:
Q  10 aacaaagaggaactcattgccatggcaaagggagattaactcaataaaggtttgcttccttaatgatctaaatcaccatttgtggagattttgcatcctt 109  Q
    ||||||||||||||| ||||||||||||||||| || || |||| |||||||||||| ||||||||||||||| ||  |||||| ||||||||||| |||    
T  37371312 aacaaagaggaactccttgccatggcaaagggaaatcaagtcaagaaaggtttgctt-cttaatgatctaaattacagtttgtgtagattttgcatgctt 37371214  T
Q  110 gacttgattaacttgttttatt 131  Q
    || ||| |||  ||||||||||    
T  37371213 gaattggttactttgttttatt 37371192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 355 - 415
Target Start/End: Original strand, 36868558 - 36868618
Alignment:
Q  355 atgatattatttctaatcatatctcgcctggtcttaccacacattcaacacaacatcctca 415  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36868558 atgatattatttctaatcatatctcgcctggtcttaccacaaattcaacacaacatcctca 36868618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 131
Target Start/End: Original strand, 36862138 - 36862258
Alignment:
Q  10 aacaaagaggaactcattgccatggcaaagggagattaactcaataaaggtttgcttccttaatgatctaaatcaccatttgtggagattttgcatcctt 109  Q
    |||||||||||||||  |||||||| |||| ||||| ||||||| |||||||||||| ||| |||||||||||||| ||  ||||| | | ||||| |||    
T  36862138 aacaaagaggaactccgtgccatgggaaagcgagatcaactcaagaaaggtttgctt-ctttatgatctaaatcacaatgcgtggacactatgcatgctt 36862236  T
Q  110 gacttgattaacttgttttatt 131  Q
    ||||||||||  ||||||||||    
T  36862237 gacttgattactttgttttatt 36862258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 50960844 - 50960912
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||||| |||||||||||||||||||||| || |||| |||||||| ||||| |||||||||||    
T  50960844 aggtcttctctctacatgcccaaaccacctaagcctattttctaccatcttttctactataggtgctac 50960912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 216 - 326
Target Start/End: Complemental strand, 21200661 - 21200553
Alignment:
Q  216 actactgtccatattatctactatccttacggctgaatccaaaggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctacc 315  Q
    |||||| ||||| | ||||||| ||||||| || ||||| | | ||||||||| |||||||||||||||||||||  || ||||||||||||| |||||     
T  21200661 actactctccatgtgatctactctccttactgcagaatctacatgtcttctctctacatgcccaaaccacctaagtctagtttccaccatcttttctac- 21200563  T
Q  316 ataggtgctac 326  Q
     ||||||||||    
T  21200562 -taggtgctac 21200553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 259 - 326
Target Start/End: Original strand, 49503766 - 49503833
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| |||||||||||||||||||||| || |||| |||||||| ||||| |||||||||||    
T  49503766 ggtcttctctctacatgcccaaaccacctaagcctattttctaccatcttttctactataggtgctac 49503833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 39600892 - 39600960
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||||| |||||||| |||||||||||||||  ||||||||||||| ||||| |||||| ||||    
T  39600892 aggtcttctctttacatgccaaaaccacctaagcttgttttccaccatcttttctactataggtactac 39600960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 258 - 326
Target Start/End: Complemental strand, 54128449 - 54128381
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||| ||| |||||||||||||||||||||| || |||| |||||||| ||||| |||||||||||    
T  54128449 aggtcttttctctacatgcccaaaccacctaagcctattttctaccatcttttctactataggtgctac 54128381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 326
Target Start/End: Complemental strand, 52138871 - 52138803
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||||| ||||||||||||||| |||||| || |||| |||| ||| ||||| |||||||||||    
T  52138871 aggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctac 52138803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 258 - 313
Target Start/End: Complemental strand, 39235209 - 39235154
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctcta 313  Q
    ||||||||||| |||||||||||||||||||||| || |||| |||||||| ||||    
T  39235209 aggtcttctctctacatgcccaaaccacctaagcctattttctaccatcttttcta 39235154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 326
Target Start/End: Complemental strand, 26490392 - 26490318
Alignment:
Q  252 atccaaaggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||| |||||| | | |||||| ||||||||||||||| || |||| |||||||| ||||| |||||||||||    
T  26490392 atccaacggtcttttatctacatgtccaaaccacctaagcctattttctaccatcttttctactataggtgctac 26490318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 327
Target Start/End: Complemental strand, 29817563 - 29817506
Alignment:
Q  270 tacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctaca 327  Q
    |||||| ||||||||||||| ||||||||| || ||||| ||||| ||||||||||||    
T  29817563 tacatgtccaaaccacctaaacttactttctacaatcttttctactataggtgctaca 29817506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 41842725 - 41842790
Alignment:
Q  261 tcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||| ||||| |||||||||||||||  |  ||||||||||||| ||||| |||||||||||    
T  41842725 tcttctctctacatacccaaaccacctaagactggtttccaccatcttttctactataggtgctac 41842790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 326
Target Start/End: Complemental strand, 38430919 - 38430851
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||| ||||| ||||||||||| | |||||||| || |||| |||||||| ||||| |||||||||||    
T  38430919 aggtcgtctctctacatgcccaatcaacctaagcctattttctaccatcttttctactataggtgctac 38430851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 325
Target Start/End: Original strand, 42510227 - 42510292
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgcta 325  Q
    ||||||||||||  |||| ||||||||||||||| || ||||||| ||||| ||||| ||||||||||    
T  42510227 aggtcttctcta--catgtccaaaccacctaagcctattttccactatcttttctactataggtgcta 42510292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 43694976 - 43695044
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||||| ||||||||||||||| ||||||  | |||| |||| ||| ||||| |||||||||||    
T  43694976 aggtcttctctctacatgcccaaaccatctaagcaaattttctaccaacttttctactataggtgctac 43695044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 5168902 - 5168835
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| ||||||  ||||||| |||||| || |||| |||| ||| |||||||||||||||||    
T  5168902 ggtcttctctctacatgttcaaaccatctaagcgtattttctaccaacttttctaccataggtgctac 5168835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 326
Target Start/End: Original strand, 36820173 - 36820240
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| |||||| | ||||||||||||| || |||||||||||||  |||  |||||||||||    
T  36820173 ggtcttctctttacatgtctaaaccacctaagcctagtttccaccatctttgctaatataggtgctac 36820240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 314
Target Start/End: Original strand, 45289307 - 45289358
Alignment:
Q  263 ttctctatacatgcccaaaccacctaagcttactttccaccatcttctctac 314  Q
    |||||| ||| |||||||||||||||||| || ||||||||||||| |||||    
T  45289307 ttctctctacgtgcccaaaccacctaagcctattttccaccatcttttctac 45289358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 326
Target Start/End: Original strand, 47233808 - 47233875
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| |||||| |||||||| |||||| || |||| |||| ||| ||||| |||||||||||    
T  47233808 ggtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctac 47233875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 322
Target Start/End: Complemental strand, 3987116 - 3987054
Alignment:
Q  260 gtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtg 322  Q
    ||||||||| ||||| |||||||||||||||  || |||| |||||||| ||||| |||||||    
T  3987116 gtcttctctctacattcccaaaccacctaagtctagtttctaccatcttttctactataggtg 3987054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 19737068 - 19737002
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgct 324  Q
    ||||||||||| | ||||| |||||||||||| | || |||| |||||||| ||||| |||||||||    
T  19737068 aggtcttctctctgcatgctcaaaccacctaaacctattttctaccatcttttctactataggtgct 19737002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 19757971 - 19757905
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgct 324  Q
    ||||||||||| | ||||| |||||||||||| | || |||| |||||||| ||||| |||||||||    
T  19757971 aggtcttctctctgcatgctcaaaccacctaaacctattttctaccatcttttctactataggtgct 19757905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 307
Target Start/End: Original strand, 48734349 - 48734395
Alignment:
Q  261 tcttctctatacatgcccaaaccacctaagcttactttccaccatct 307  Q
    |||||||| |||||||||||||||||||||| || |||| |||||||    
T  48734349 tcttctctctacatgcccaaaccacctaagcctattttctaccatct 48734395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 326
Target Start/End: Complemental strand, 49841688 - 49841622
Alignment:
Q  260 gtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||| |||| ||||||||||||| ||  || ||||||||||||| ||||  |||||||||||    
T  49841688 gtcttctctctacacgcccaaaccaccttagtctagtttccaccatcttttctaatataggtgctac 49841622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 326
Target Start/End: Original strand, 54365194 - 54365255
Alignment:
Q  264 tctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||| |||||||||||||||||||||| || ||||| |||| || ||||| |||||||||||    
T  54365194 tctctctacatgcccaaaccacctaagc-tattttccgccatattttctactataggtgctac 54365255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 51447924 - 51447989
Alignment:
Q  261 tcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||| ||||||||||||| | |||||| || |||| |||| ||| ||||| |||||||||||    
T  51447924 tcttctctctacatgcccaaactatctaagcctattttctaccaacttttctactataggtgctac 51447989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 29919282 - 29919234
Alignment:
Q  363 atttctaatcatatctcgcctggtcttaccacacattcaacacaacatc 411  Q
    |||||||||||||||||| ||  || |||||||||| ||||||||||||    
T  29919282 atttctaatcatatctcgtctaatcgtaccacacatccaacacaacatc 29919234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 29928586 - 29928634
Alignment:
Q  363 atttctaatcatatctcgcctggtcttaccacacattcaacacaacatc 411  Q
    |||||||||||||||||| ||  || |||||||||| ||||||||||||    
T  29928586 atttctaatcatatctcgtctaatcgtaccacacatccaacacaacatc 29928634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 29968435 - 29968387
Alignment:
Q  363 atttctaatcatatctcgcctggtcttaccacacattcaacacaacatc 411  Q
    |||||||||||||||||| ||  || |||||||||| ||||||||||||    
T  29968435 atttctaatcatatctcgtctaatcgtaccacacatccaacacaacatc 29968387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 29977740 - 29977788
Alignment:
Q  363 atttctaatcatatctcgcctggtcttaccacacattcaacacaacatc 411  Q
    |||||||||||||||||| ||  || |||||||||| ||||||||||||    
T  29977740 atttctaatcatatctcgtctaatcgtaccacacatccaacacaacatc 29977788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 326
Target Start/End: Original strand, 34719303 - 34719351
Alignment:
Q  278 caaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||| |||||||| | ||||||||||||||| ||||| |||||||||||    
T  34719303 caaaacacctaagttgactttccaccatcttttctacgataggtgctac 34719351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 326
Target Start/End: Complemental strand, 38060502 - 38060434
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||||| |||||| |||||||| |||||| || |||| |||| ||| ||||  |||||||||||    
T  38060502 aggtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctattataggtgctac 38060434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 415
Target Start/End: Complemental strand, 49841589 - 49841537
Alignment:
Q  363 atttctaatcatatctcgcctggtcttaccacacattcaacacaacatcctca 415  Q
    |||||||||| || |||| || ||||||| |||||| ||||||||||||||||    
T  49841589 atttctaatcttacctcgtctagtcttactacacatccaacacaacatcctca 49841537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 53)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 10 - 128
Target Start/End: Complemental strand, 17615765 - 17615648
Alignment:
Q  10 aacaaagaggaactcattgccatggcaaagggagattaactcaataaaggtttgcttccttaatgatctaaatcaccatttgtggagattttgcatcctt 109  Q
    ||||||||||||||| ||||||||| ||||||| || |  |||| |||||||||||| |||||||||||||||||| ||||||| ||||||| ||| |||    
T  17615765 aacaaagaggaactccttgccatggaaaagggaaatcatgtcaagaaaggtttgctt-cttaatgatctaaatcacaatttgtgtagatttttcatgctt 17615667  T
Q  110 gacttgattaacttgtttt 128  Q
    || ||| |||  |||||||    
T  17615666 gaattggttactttgtttt 17615648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 12966092 - 12966025
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| |||||||||||||||||||||| || ||||||||||||| ||| | |||||||||||    
T  12966092 ggtcttctctctacatgcccaaaccacctaagcatagtttccaccatcttttcttctataggtgctac 12966025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 263 - 323
Target Start/End: Original strand, 7189442 - 7189502
Alignment:
Q  263 ttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgc 323  Q
    |||||| ||||||||||||||||||||||||| |||| |||||||| ||||| ||||||||    
T  7189442 ttctctctacatgcccaaaccacctaagcttattttctaccatcttttctactataggtgc 7189502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 262 - 326
Target Start/End: Complemental strand, 42187537 - 42187473
Alignment:
Q  262 cttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||| |||||||||||||||||||||| || ||||||||||||| ||||  |||||||||||    
T  42187537 cttctctttacatgcccaaaccacctaagcctattttccaccatcttttctattataggtgctac 42187473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 264 - 326
Target Start/End: Complemental strand, 38920859 - 38920797
Alignment:
Q  264 tctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||| |||||||||||||||| ||||| || ||||||||||||| ||||| |||||||||||    
T  38920859 tctctctacatgcccaaaccacttaagcctagtttccaccatcttttctactataggtgctac 38920797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 326
Target Start/End: Complemental strand, 40169718 - 40169652
Alignment:
Q  260 gtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||| ||| |||||||||||||||||||||| || ||||||||||||| ||||| ||| |||||||    
T  40169718 gtcttatctctacatgcccaaaccacctaagcctattttccaccatcttttctactataagtgctac 40169652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 251 - 313
Target Start/End: Complemental strand, 41948594 - 41948532
Alignment:
Q  251 aatccaaaggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctcta 313  Q
    |||||| ||||||||||| |||||||||||||||| ||||| || ||||||||||||| ||||    
T  41948594 aatccagaggtcttctctctacatgcccaaaccacttaagcctagtttccaccatcttttcta 41948532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 326
Target Start/End: Complemental strand, 47848743 - 47848677
Alignment:
Q  260 gtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||  ||||||||||||||||||||| || ||||||||||||| ||||| ||||| |||||    
T  47848743 gtcttctctcgacatgcccaaaccacctaagcctattttccaccatcttttctactataggcgctac 47848677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 27021906 - 27021971
Alignment:
Q  261 tcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||| |||||||||||||||||||||| || ||| ||||| ||| ||||| |||||||||||    
T  27021906 tcttctctctacatgcccaaaccacctaagcctagttttcaccaacttttctactataggtgctac 27021971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 326
Target Start/End: Complemental strand, 28021032 - 28020967
Alignment:
Q  261 tcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||| ||||||||||||||||||||||  | ||||||||||||| ||||| ||| |||||||    
T  28021032 tcttctctctacatgcccaaaccacctaagccaagtttccaccatcttttctacgataagtgctac 28020967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 19262644 - 19262712
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||||| ||||||| ||||||||||||||  | |||| |||||||| ||||| |||||||||||    
T  19262644 aggtcttctctctacatgctcaaaccacctaagccaagtttctaccatcttttctacaataggtgctac 19262712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 36101976 - 36102044
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||||| ||||| |||||||||||||||| || |||||| |||||| ||||  |||||||||||    
T  36101976 aggtcttctctctacatccccaaaccacctaagcctattttccaacatcttttctattataggtgctac 36102044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 326
Target Start/End: Original strand, 36514410 - 36514486
Alignment:
Q  250 gaatccaaaggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||| | ||| ||||| |||||||||||||||||||||  || |||| |||||||| ||||| |||||||||||    
T  36514410 gaatccacaagtcgtctctctacatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctac 36514486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 326
Target Start/End: Original strand, 12841487 - 12841554
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| ||||||||||||||| |||||| || |||| |||| ||| ||||| |||||||||||    
T  12841487 ggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctac 12841554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 326
Target Start/End: Original strand, 13859220 - 13859287
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| ||||||||||||||| |||||| || |||| |||| ||| ||||| |||||||||||    
T  13859220 ggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctac 13859287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 34869490 - 34869423
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| ||||||||||||||| |||||| || |||| |||| ||| ||||| |||||||||||    
T  34869490 ggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctac 34869423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 326
Target Start/End: Original strand, 35906413 - 35906480
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| ||||||||||||||| |||||| || |||| |||| ||| ||||| |||||||||||    
T  35906413 ggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctac 35906480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 49029346 - 49029279
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| ||||||||||||||| |||||| || |||| |||| ||| ||||| |||||||||||    
T  49029346 ggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctac 49029279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 2885936 - 2886001
Alignment:
Q  261 tcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||| ||||||||||||||| |||||| || |||| |||| ||| ||||| |||||||||||    
T  2885936 tcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctac 2886001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 259 - 308
Target Start/End: Original strand, 24549905 - 24549954
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatctt 308  Q
    |||||||||| |||||||||||||||||||||| || |||||| ||||||    
T  24549905 ggtcttctctctacatgcccaaaccacctaagcctagtttccatcatctt 24549954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 35713764 - 35713719
Alignment:
Q  260 gtcttctctatacatgcccaaaccacctaagcttactttccaccat 305  Q
    ||||||||| |||||||||||||||||||||| || ||||||||||    
T  35713764 gtcttctctctacatgcccaaaccacctaagcctattttccaccat 35713719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 6420703 - 6420747
Alignment:
Q  260 gtcttctctatacatgcccaaaccacctaagcttactttccacca 304  Q
    ||||||||| |||||||||||||||||||||| || |||||||||    
T  6420703 gtcttctctctacatgcccaaaccacctaagcctagtttccacca 6420747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 322
Target Start/End: Complemental strand, 7273110 - 7273046
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtg 322  Q
    ||||||||||| ||||||||||||||| |||||| || |||| |||| ||| ||||| |||||||    
T  7273110 aggtcttctctgtacatgcccaaaccatctaagcctattttctaccaacttttctactataggtg 7273046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 28628144 - 28628212
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||| |||||| ||||||||||||||||||||||  | ||||||||||| | |||||  ||||||||||    
T  28628144 aggttttctctttacatgcccaaaccacctaagccaattttccaccatcatttctactctaggtgctac 28628212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 322
Target Start/End: Original strand, 30200174 - 30200238
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtg 322  Q
    ||||||||| | |||||||| ||| ||||||||| || ||||||||||||| ||||| |||||||    
T  30200174 aggtcttctatttacatgccaaaatcacctaagcctagtttccaccatcttttctactataggtg 30200238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 6374938 - 6374871
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| ||||||| ||||||| |||||| || |||| |||| ||| ||||| |||||||||||    
T  6374938 ggtcttctctctacatgctcaaaccatctaagcctattttctaccaacttttctactataggtgctac 6374871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 323
Target Start/End: Complemental strand, 7220813 - 7220750
Alignment:
Q  260 gtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgc 323  Q
    ||||||||| ||||||||||||||||||||||  | |||| | |||||| ||||| ||||||||    
T  7220813 gtcttctctctacatgcccaaaccacctaagccaagtttctatcatcttttctacaataggtgc 7220750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 11594030 - 11593963
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| ||||||||||||||| |||| | || |||| |||| ||| ||||| |||||||||||    
T  11594030 ggtcttctctctacatgcccaaaccatctaaccgtattttctaccaacttttctactataggtgctac 11593963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 22349690 - 22349623
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| |||||||| |||||| |||||| || |||| |||| ||| ||||| |||||||||||    
T  22349690 ggtcttctctctacatgccaaaaccatctaagcctattttctaccaacttttctactataggtgctac 22349623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 31005293 - 31005226
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| ||||||||||||||| |||| | || |||| |||| ||| ||||| |||||||||||    
T  31005293 ggtcttctctctacatgcccaaaccatctaaacctattttctaccaacttttctactataggtgctac 31005226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 33073022 - 33072955
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| |||||||||||| || |||||| || |||| |||| ||| ||||| |||||||||||    
T  33073022 ggtcttctctctacatgcccaaatcatctaagcctattttctaccaacttttctactataggtgctac 33072955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 326
Target Start/End: Original strand, 39906582 - 39906649
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| |||||||||||| || |||||| || |||| |||| ||| ||||| |||||||||||    
T  39906582 ggtcttctctctacatgcccaaatcatctaagcctattttctaccaacttttctactataggtgctac 39906649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 43281744 - 43281677
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| |||||| |||||||| |||||| || |||| |||| ||| ||||| |||||||||||    
T  43281744 ggtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctac 43281677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 326
Target Start/End: Original strand, 45836692 - 45836759
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| |||||| |||||||| |||||| || |||| |||| ||| ||||| |||||||||||    
T  45836692 ggtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctac 45836759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 326
Target Start/End: Complemental strand, 46990001 - 46989906
Alignment:
Q  231 atctactatccttacggctgaatccaaaggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| |||| ||  |||| | |||||| ||| | |||||||||||||||||||| | |  ||| |||||||| ||||| |||||||||||    
T  46990001 atctactatctttactgcgaaatctataggtctcctccacacatgcccaaaccacctaagatgaaattcaaccatcttttctacaataggtgctac 46989906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 326
Target Start/End: Original strand, 18605359 - 18605425
Alignment:
Q  260 gtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||| ||||||| ||||||||||||| ||| |||| |||||||| | ||  |||||||||||    
T  18605359 gtcttctctctacatgctcaaaccacctaagtttagtttctaccatcttttataatataggtgctac 18605425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 326
Target Start/End: Complemental strand, 18637631 - 18637565
Alignment:
Q  260 gtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||| ||||||| ||||||||||||| ||| |||| |||||||| | ||  |||||||||||    
T  18637631 gtcttctctctacatgctcaaaccacctaagtttagtttctaccatcttttataatataggtgctac 18637565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 326
Target Start/End: Complemental strand, 18651065 - 18650999
Alignment:
Q  260 gtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||| ||||||| ||||||||||||| ||| |||| |||||||| | ||  |||||||||||    
T  18651065 gtcttctctctacatgctcaaaccacctaagtttagtttctaccatcttttataatataggtgctac 18650999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 326
Target Start/End: Original strand, 25579290 - 25579356
Alignment:
Q  260 gtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||| ||||| |||||||||||||||| || |||||||||| || ||| | || ||||||||    
T  25579290 gtcttctctctacatccccaaaccacctaagcctattttccaccattttttctgctatgggtgctac 25579356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 326
Target Start/End: Complemental strand, 43282477 - 43282411
Alignment:
Q  260 gtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||| |||||||||||  ||||||||| || ||||||||  ||| ||||| |||||||||||    
T  43282477 gtcttctctctacatgcccaattcacctaagcctagtttccaccgacttttctactataggtgctac 43282411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 321
Target Start/End: Original strand, 44855384 - 44855446
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggt 321  Q
    |||||||||| ||||||||||||||| |||||| || |||| |||| ||| ||||| ||||||    
T  44855384 ggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggt 44855446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 326
Target Start/End: Original strand, 46356069 - 46356135
Alignment:
Q  260 gtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||| ||||||||||||||| |||| | || |||| |||| ||| ||||| |||||||||||    
T  46356069 gtcttctctctacatgcccaaaccatctaaacctattttctaccaacttttctactataggtgctac 46356135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 308
Target Start/End: Original strand, 38135424 - 38135473
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatctt 308  Q
    |||||||| | |||||| ||||||||||||||| || |||||||||||||    
T  38135424 ggtcttctgtctacatgtccaaaccacctaagcctattttccaccatctt 38135473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 305
Target Start/End: Original strand, 48202879 - 48202960
Alignment:
Q  224 ccatattatctactatccttacggctgaatccaaaggtcttctctatacatgcccaaaccacctaagcttactttccaccat 305  Q
    |||||| ||||||| |||||||  | ||||| | | ||||||||| ||||||| |||||||||||||| ||  |||||||||    
T  48202879 ccatatgatctactctccttactacagaatctacaagtcttctctctacatgcgcaaaccacctaagcctagattccaccat 48202960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 326
Target Start/End: Complemental strand, 5335999 - 5335923
Alignment:
Q  250 gaatccaaaggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||| || |||||||| || ||||||||||||||||||  || |||| ||||||||  |||| |||| ||||||    
T  5335999 gaatccacagttcttctctctatatgcccaaaccacctaagtctagtttcgaccatctttcctactatagatgctac 5335923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 322
Target Start/End: Complemental strand, 14593844 - 14593772
Alignment:
Q  250 gaatccaaaggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtg 322  Q
    ||||||| ||||||||||  |||||||||||| ||||||||  || |||| ||||| || ||||| |||||||    
T  14593844 gaatccacaggtcttctcactacatgcccaaatcacctaagtctagtttctaccattttttctactataggtg 14593772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 326
Target Start/End: Original strand, 26742127 - 26742175
Alignment:
Q  278 caaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||||| | || ||||||||||||| ||||| |||||||||||    
T  26742127 caaaccacctaatcctattttccaccatcttttctactataggtgctac 26742175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 415
Target Start/End: Original strand, 30200263 - 30200315
Alignment:
Q  363 atttctaatcatatctcgcctggtcttaccacacattcaacacaacatcctca 415  Q
    ||||||||||||||| |  ||  ||||||||||||| ||||||||||||||||    
T  30200263 atttctaatcatatcccatctaatcttaccacacatccaacacaacatcctca 30200315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 323
Target Start/End: Original strand, 33350018 - 33350082
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgc 323  Q
    |||||||||| ||||||||||||||| |||||| || |||| | || ||| ||||| ||||||||    
T  33350018 ggtcttctctctacatgcccaaaccatctaagcctattttctagcaacttttctactataggtgc 33350082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 326
Target Start/End: Complemental strand, 36136835 - 36136767
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||| |||||| || |||||||||| |||||||  || |||| |||||||| ||||| |||||||||||    
T  36136835 aggtattctctctatatgcccaaacaacctaagactattttctaccatcttttctactataggtgctac 36136767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #51
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 37618015 - 37617947
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagctta-ctttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| ||||||||||||||| |||||| ||  |||| |||| ||| ||||| |||||||||||    
T  37618015 ggtcttctctctacatgcccaaaccatctaagcctatttttctaccaacttttctactataggtgctac 37617947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #52
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 326
Target Start/End: Complemental strand, 40830294 - 40830226
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||||| | |||||||||||||||||||   | |||| |||||||| ||| | |||||||||||    
T  40830294 aggtcttctctcttcatgcccaaaccacctaagtagagtttctaccatcttttcttcaataggtgctac 40830226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #53
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 415
Target Start/End: Original strand, 48736203 - 48736255
Alignment:
Q  363 atttctaatcatatctcgcctggtcttaccacacattcaacacaacatcctca 415  Q
    |||||||||  ||||||  || ||||||||||||||||||| |||||||||||    
T  48736203 atttctaattttatctcatctagtcttaccacacattcaacgcaacatcctca 48736255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 258 - 325
Target Start/End: Complemental strand, 29398889 - 29398822
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgcta 325  Q
    ||||||||||| |||||||||||||||| ||||| || ||||||||||||| ||||||||||||||||    
T  29398889 aggtcttctctctacatgcccaaaccacataagcatattttccaccatcttttctaccataggtgcta 29398822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 261 - 326
Target Start/End: Complemental strand, 31459098 - 31459033
Alignment:
Q  261 tcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||| |||||||||||||||||||||| || |||| |||||||| ||||| |||||||||||    
T  31459098 tcttctctttacatgcccaaaccacctaagcctattttctaccatcttttctactataggtgctac 31459033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 42285903 - 42285972
Alignment:
Q  250 gaatccaaaggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccatag 319  Q
    ||||||| |||||||||||||||||||||||||||||||||  || |||| |||||||| ||||| ||||    
T  42285903 gaatccacaggtcttctctatacatgcccaaaccacctaagtctagtttctaccatcttttctactatag 42285972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 251 - 324
Target Start/End: Original strand, 46715576 - 46715649
Alignment:
Q  251 aatccaaaggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgct 324  Q
    |||||| | ||||||||| |||||||||| ||||||||||| || ||||||||||||| ||||| |||||||||    
T  46715576 aatccacatgtcttctctctacatgcccacaccacctaagcctagtttccaccatcttttctacaataggtgct 46715649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 326
Target Start/End: Original strand, 35555850 - 35555926
Alignment:
Q  250 gaatccaaaggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||| ||||||||||| || ||||||||||||||||||  || |||| |||||||| ||||| |||||||||||    
T  35555850 gaatccacaggtcttctctctaaatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctac 35555926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 326
Target Start/End: Original strand, 51252664 - 51252740
Alignment:
Q  250 gaatccaaaggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||| | ||||||||| |||||||||| ||||||||||| || ||||||||||||| ||||| | |||||||||    
T  51252664 gaatccacatgtcttctctctacatgcccataccacctaagcctagtttccaccatcttttctactagaggtgctac 51252740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 260 - 322
Target Start/End: Complemental strand, 50662457 - 50662394
Alignment:
Q  260 gtcttctctatacatgcccaaa-ccacctaagcttactttccaccatcttctctaccataggtg 322  Q
    ||||||||| |||||||||||| |||||||||| |||||||||||||||| ||||| |||||||    
T  50662457 gtcttctctctacatgcccaaaaccacctaagcctactttccaccatcttttctactataggtg 50662394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 326
Target Start/End: Complemental strand, 28236252 - 28236186
Alignment:
Q  260 gtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||| ||||||||||||||| |||||| || ||||||||| ||| ||||| |||||||||||    
T  28236252 gtcttctctctacatgcccaaaccatctaagcctattttccaccaacttttctactataggtgctac 28236186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 326
Target Start/End: Complemental strand, 54470276 - 54470210
Alignment:
Q  260 gtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||| |||||||||||||||| ||||  || ||||||||||||| ||||| |||||||||||    
T  54470276 gtcttctctctacatgcccaaaccacttaagtctagtttccaccatcttttctactataggtgctac 54470210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 323
Target Start/End: Original strand, 42639223 - 42639296
Alignment:
Q  250 gaatccaaaggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgc 323  Q
    ||||||| | ||||||||| |||||| ||||||||||||||| |  ||||||||||||| ||||| ||||||||    
T  42639223 gaatccataagtcttctctctacatgtccaaaccacctaagcctggtttccaccatcttttctactataggtgc 42639296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 314
Target Start/End: Complemental strand, 47611798 - 47611742
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctac 314  Q
    ||||||||||| |||||||||||||||||||||| || |||||| |||||| |||||    
T  47611798 aggtcttctctctacatgcccaaaccacctaagcctattttccatcatcttttctac 47611742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 326
Target Start/End: Complemental strand, 31339634 - 31339540
Alignment:
Q  231 atctactatccttacggctgaatccaaaggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||||||||  |  |||| | | ||||||||| ||||||| ||||||||||||||||| |||| ||||| || |||||||||||| ||||    
T  31339634 atctactatccttactacataatctacaagtcttctctctacatgctcaaaccacctaagcttagtttcgaccat-ttttctaccataggttctac 31339540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 326
Target Start/End: Original strand, 31960026 - 31960093
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| ||||||||||||||| |||||| || |||| |||| ||| ||||| |||||||||||    
T  31960026 ggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctac 31960093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 43433994 - 43433927
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| ||||||||||||||| |||||| || |||| |||| ||| ||||| |||||||||||    
T  43433994 ggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctac 43433927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 326
Target Start/End: Original strand, 52569727 - 52569794
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| ||||||||||||||| |||||| || |||| |||| ||| ||||| |||||||||||    
T  52569727 ggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctac 52569794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 53707864 - 53707797
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| ||||||||||||||| |||||| || |||| |||| ||| ||||| |||||||||||    
T  53707864 ggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctac 53707797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 38570950 - 38571024
Alignment:
Q  250 gaatccaaaggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgct 324  Q
    ||||||| | ||||||| | |||||||||||||||||||||| || ||||||| ||||| | ||| |||||||||    
T  38570950 gaatccacatgtcttctttctacatgcccaaaccacctaagcctagtttccactatcttttgtactataggtgct 38571024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 260 - 313
Target Start/End: Complemental strand, 30853426 - 30853373
Alignment:
Q  260 gtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctcta 313  Q
    ||||||||| ||||||||||||||||||||||| | ||||||| ||||| ||||    
T  30853426 gtcttctctctacatgcccaaaccacctaagctgagtttccactatcttgtcta 30853373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 326
Target Start/End: Complemental strand, 436300 - 436232
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||||| |||||||||||| || |||||| || |||| |||| ||| ||||| |||||||||||    
T  436300 aggtcttctctctacatgcccaaatcatctaagcctattttctaccaacttttctactataggtgctac 436232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 322
Target Start/End: Complemental strand, 33710003 - 33709931
Alignment:
Q  250 gaatccaaaggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtg 322  Q
    ||||||| || ||||||||  ||||||| ||||||||||| | || ||||||||||||| ||||| |||||||    
T  33710003 gaatccacagttcttctctccacatgcctaaaccacctaaacctagtttccaccatcttttctactataggtg 33709931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 326
Target Start/End: Complemental strand, 38266197 - 38266149
Alignment:
Q  278 caaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||||||||||| ||||||||||| ||||||  |||||||||||    
T  38266197 caaaccacctaagcttagtttccaccatcctctctattataggtgctac 38266149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 326
Target Start/End: Complemental strand, 41192907 - 41192839
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||||| ||||||| |||| ||||||||  || ||||||||||||| |||||  ||||||||||    
T  41192907 aggtcttctctctacatgcacaaatcacctaagtctagtttccaccatcttttctactgtaggtgctac 41192839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 313
Target Start/End: Complemental strand, 44860914 - 44860862
Alignment:
Q  261 tcttctctatacatgcccaaaccacctaagcttactttccaccatcttctcta 313  Q
    |||||||||||||||||||||||| |||||| |  ||||||||||||| ||||    
T  44860914 tcttctctatacatgcccaaaccatctaagcctggtttccaccatcttttcta 44860862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 322
Target Start/End: Complemental strand, 49987487 - 49987435
Alignment:
Q  270 tacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtg 322  Q
    |||||| ||||||||||||||| || ||||||||||||| ||||| |||||||    
T  49987487 tacatgaccaaaccacctaagcctattttccaccatcttttctactataggtg 49987435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 314
Target Start/End: Complemental strand, 50471597 - 50471541
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctac 314  Q
    ||||||||||| |||||||||||||||| ||| | || ||||||||||||| |||||    
T  50471597 aggtcttctctctacatgcccaaaccacttaaacctagtttccaccatcttttctac 50471541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 33227279 - 33227212
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| ||||||||||||| | |||||| || |||| |||| ||| ||||| |||||||||||    
T  33227279 ggtcttctctctacatgcccaaacaatctaagcctattttctaccaacttttctactataggtgctac 33227212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 326
Target Start/End: Original strand, 48622755 - 48622822
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| ||||||||||||||| |||||| || |||| |||| ||| ||||| || ||||||||    
T  48622755 ggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactatgggtgctac 48622822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 326
Target Start/End: Complemental strand, 1793529 - 1793463
Alignment:
Q  260 gtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||| |||||| |||||||| ||||||||| |||| |||| ||| | ||| |||||||||||    
T  1793529 gtcttctctctacatgtccaaaccatctaagcttattttctaccaacttttttactataggtgctac 1793463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 326
Target Start/End: Original strand, 20591513 - 20591579
Alignment:
Q  260 gtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||| ||||||||||||||| |||| |||| |||| |||| ||| ||||| ||| |||||||    
T  20591513 gtcttctctctacatgcccaaaccatctaatcttattttctaccaacttttctactataagtgctac 20591579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 326
Target Start/End: Complemental strand, 28497558 - 28497493
Alignment:
Q  260 gtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||| |||||||||||||||||||||| |  ||||||| ||||| ||||| | |||||||||    
T  28497558 gtcttctctctacatgcccaaaccacctaagcct-ttttccacaatcttttctactaaaggtgctac 28497493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 4440923 - 4440858
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgct 324  Q
    |||||||||| || |||||||||||| |||||| || |||| |||| ||| ||||| |||||||||    
T  4440923 ggtcttctctctagatgcccaaaccatctaagcctattttctaccaacttttctactataggtgct 4440858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 30621418 - 30621483
Alignment:
Q  261 tcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||| ||| |||||||| ||||||| | || ||||||||||||| ||||| ||| |||||||    
T  30621418 tcttctctctacgtgcccaaatcacctaaacctattttccaccatcttttctactataagtgctac 30621483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 326
Target Start/End: Complemental strand, 37797920 - 37797855
Alignment:
Q  261 tcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||| |||||| |||||||| |||||| || |||| |||| ||| ||||| |||||||||||    
T  37797920 tcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctac 37797855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 326
Target Start/End: Complemental strand, 10209105 - 10209037
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||||  ||||||||||||||| ||||| ||| ||||  ||||||| ||||| |||||| ||||    
T  10209105 aggtcttctcgctacatgcccaaaccaactaagtttagtttctgccatcttttctactataggttctac 10209037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 13805469 - 13805509
Alignment:
Q  251 aatccaaaggtcttctctatacatgcccaaaccacctaagc 291  Q
    |||| ||||||||||||| ||||| ||||||||||||||||    
T  13805469 aatctaaaggtcttctctctacatacccaaaccacctaagc 13805509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 20105775 - 20105823
Alignment:
Q  363 atttctaatcatatctcgcctggtcttaccacacattcaacacaacatc 411  Q
    |||||||||||||||||| || |||||||||||||| || | |||||||    
T  20105775 atttctaatcatatctcgtctagtcttaccacacatccatcgcaacatc 20105823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 31403229 - 31403295
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||| |||||| ||||||||||| |||||||||| || |||||||||| || ||||| |||||||||||    
T  31403229 aggtgttctctttacatgcccaa-ccacctaagcctagtttccaccat-ttttctactataggtgctac 31403295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 326
Target Start/End: Original strand, 42293472 - 42293528
Alignment:
Q  270 tacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||| ||||||||||||||||  | |||||| |||||| ||||| |||||||||||    
T  42293472 tacatacccaaaccacctaagccgagtttccatcatcttttctactataggtgctac 42293528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 209
Target Start/End: Original strand, 44641936 - 44641996
Alignment:
Q  149 tatagcttttcaaggtcttcttctacctttagtgatttaactactctccatattatctact 209  Q
    ||||| ||||| | ||||||||||  |||||||||||| |||||||||||| | |||||||    
T  44641936 tatagtttttcgaagtcttcttctgtctttagtgatttgactactctccatttgatctact 44641996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 193
Target Start/End: Original strand, 44686700 - 44686744
Alignment:
Q  149 tatagcttttcaaggtcttcttctacctttagtgatttaactact 193  Q
    ||||| ||||| |||||||||||| ||| ||||||||||||||||    
T  44686700 tatagtttttcgaggtcttcttctgcctctagtgatttaactact 44686744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 257 - 326
Target Start/End: Original strand, 44078 - 44147
Alignment:
Q  257 aaggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||||| |||||||||||||||||||||| || ||||| ||||||| ||||| |||||||||||    
T  44078 aaggtcttctctctacatgcccaaaccacctaagcctattttccgccatcttttctactataggtgctac 44147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 31538 - 31471
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| ||||||||||||||| |||||| || |||| |||| ||| ||||| |||||||||||    
T  31538 ggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctac 31471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 258 - 326
Target Start/End: Complemental strand, 5338795 - 5338727
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||||| | ||||||||||||||||||||| | ||||||||||||| ||||| |||||||||||    
T  5338795 aggtcttctctctgcatgcccaaaccacctaagctcagtttccaccatcttttctactataggtgctac 5338727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 27848016 - 27848084
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||||| | ||||||||||||||||||||||| |||| |||||||| ||||||| |||||||||    
T  27848016 aggtcttctctctgcatgcccaaaccacctaagcttattttctaccatcttttctaccacaggtgctac 27848084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 260 - 326
Target Start/End: Original strand, 48431619 - 48431685
Alignment:
Q  260 gtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||| |||||||||||||||||||||| || ||||||||||||| ||||| ||||| |||||    
T  48431619 gtcttctctctacatgcccaaaccacctaagcctattttccaccatcttttctactataggggctac 48431685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 35828761 - 35828829
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||||| |||| | ||||||||||||| | || ||||||||||||| |||||||||||||||||    
T  35828761 aggtcttctctctacacgtccaaaccacctaaccctattttccaccatcttttctaccataggtgctac 35828829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 326
Target Start/End: Original strand, 34792561 - 34792628
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| ||||||||||||||| |||||| ||||||| |||| ||| ||||| |||||||||||    
T  34792561 ggtcttctctctacatgcccaaaccatctaagcctactttctaccaacttttctactataggtgctac 34792628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 322
Target Start/End: Complemental strand, 43423788 - 43423726
Alignment:
Q  260 gtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtg 322  Q
    ||||||||| |||||| ||||||||||||||| || ||||||||||||| ||||| |||||||    
T  43423788 gtcttctctctacatggccaaaccacctaagcctagtttccaccatcttttctactataggtg 43423726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 326
Target Start/End: Original strand, 14226047 - 14226108
Alignment:
Q  265 ctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||| |||||||||||||||||||||| || ||||||||||||| ||||  |||||||||||    
T  14226047 ctctctacatgcccaaaccacctaagcctattttccaccatcttttctatgataggtgctac 14226108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 326
Target Start/End: Complemental strand, 40416439 - 40416374
Alignment:
Q  261 tcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||| |||||||| ||||||||||||| |  ||||||||||||| ||||| |||||||||||    
T  40416439 tcttctctctacatgcctaaaccacctaagcctcgtttccaccatcttttctactataggtgctac 40416374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 326
Target Start/End: Complemental strand, 1661501 - 1661433
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||||| ||||||| ||||||| || ||| || ||||||||||||| ||||| |||||||||||    
T  1661501 aggtcttctctctacatgctcaaaccatctgagcctattttccaccatcttttctactataggtgctac 1661433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 326
Target Start/End: Complemental strand, 2544670 - 2544602
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||||| |||||| ||||||||||||||  |  ||||||||||||| ||||| |||||||||||    
T  2544670 aggtcttctctctacatgtccaaaccacctaagtctgttttccaccatcttttctactataggtgctac 2544602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 326
Target Start/End: Original strand, 3819059 - 3819135
Alignment:
Q  250 gaatccaaaggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||| | ||||||| | |||||||||||||||| ||||  || || |||||||||| |||||||||||||||||    
T  3819059 gaatccacaagtcttctttctacatgcccaaaccacttaagtctagttaccaccatcttttctaccataggtgctac 3819135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 1210815 - 1210748
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| ||||||||||||||| |||||| || |||| |||| ||| ||||| |||||||||||    
T  1210815 ggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctac 1210748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 314
Target Start/End: Original strand, 8343062 - 8343125
Alignment:
Q  251 aatccaaaggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctac 314  Q
    |||||| ||||||||||| ||||||||||  |||||||||| || ||||||||||||| |||||    
T  8343062 aatccacaggtcttctctctacatgcccagtccacctaagcctagtttccaccatcttttctac 8343125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 9509388 - 9509321
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| ||||||||||||| |||||||| || |||  |||||||| ||||| |||||||||||    
T  9509388 ggtcttctctctacatgcccaaactacctaagcctattttttaccatcttttctactataggtgctac 9509321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 326
Target Start/End: Complemental strand, 38868948 - 38868885
Alignment:
Q  263 ttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||| ||||||||||||||||||||||  | ||||||||||||| ||||  |||||||||||    
T  38868948 ttctctctacatgcccaaaccacctaagccgagtttccaccatcttttctatgataggtgctac 38868885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 51602126 - 51602059
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| ||||||||||||||| |||||| || |||| |||| ||| ||||| |||||||||||    
T  51602126 ggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctac 51602059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 13827928 - 13827994
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgct 324  Q
    ||||||||||| ||||||  |||||||||||| | || ||||||||||||| ||||| |||||||||    
T  13827928 aggtcttctctctacatgttcaaaccacctaaccctagtttccaccatcttttctactataggtgct 13827994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 326
Target Start/End: Complemental strand, 8671986 - 8671921
Alignment:
Q  261 tcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||| ||||||||||||||| |||||| || |||| |||| ||| ||||| |||||||||||    
T  8671986 tcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctac 8671921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 363 - 415
Target Start/End: Complemental strand, 4379983 - 4379931
Alignment:
Q  363 atttctaatcatatctcgcctggtcttaccacacattcaacacaacatcctca 415  Q
    ||||||||||||||||   || |||||||||||||| ||||||||||||||||    
T  4379983 atttctaatcatatcttttctagtcttaccacacatccaacacaacatcctca 4379931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 322
Target Start/End: Original strand, 32404737 - 32404801
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtg 322  Q
    ||||||||||| |||||  ||||||||||||||| || ||||||||||||| | ||| |||||||    
T  32404737 aggtcttctctctacatatccaaaccacctaagcctattttccaccatcttttttactataggtg 32404801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 363 - 415
Target Start/End: Original strand, 52442808 - 52442860
Alignment:
Q  363 atttctaatcatatctcgcctggtcttaccacacattcaacacaacatcctca 415  Q
    |||||||||| ||||| | || |||||||||||||| ||||||||||||||||    
T  52442808 atttctaatcttatcttgtctagtcttaccacacatccaacacaacatcctca 52442860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 15086004 - 15085937
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| |||||| |||||||| |||||| || |||| |||| ||| ||||| |||||||||||    
T  15086004 ggtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctac 15085937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 22090166 - 22090099
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||  ||||||||||||||| |||||| || |||| |||| ||| ||||| |||||||||||    
T  22090166 ggtcttctccctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctac 22090099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 251 - 326
Target Start/End: Original strand, 23791848 - 23791923
Alignment:
Q  251 aatccaaaggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||| | ||||||||| ||||||| ||||||||||||| ||| | || |||||||| |||||||| ||| ||||    
T  23791848 aatccacatgtcttctctctacatgcacaaaccacctaagtttagtatctaccatcttttctaccatgggtcctac 23791923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 39140590 - 39140523
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| ||||||||||||||||||||||  | |||   ||||||| ||||| |||||||||||    
T  39140590 ggtcttctctctacatgcccaaaccacctaagccaattttttgccatcttttctactataggtgctac 39140523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 322
Target Start/End: Original strand, 51440977 - 51441040
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtg 322  Q
    |||||||||| ||||||||||||||| |||||| || |||| |||| ||| ||||| |||||||    
T  51440977 ggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtg 51441040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 308
Target Start/End: Original strand, 10569278 - 10569328
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatctt 308  Q
    ||||||||||| ||||||||||||||||||||||  | ||| |||||||||    
T  10569278 aggtcttctctctacatgcccaaaccacctaagccaagttttcaccatctt 10569328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 326
Target Start/End: Original strand, 32231167 - 32231233
Alignment:
Q  260 gtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||| ||||||||||||||| |||||| || |||| ||||  || ||||| |||||||||||    
T  32231167 gtcttctctctacatgcccaaaccatctaagcctattttctaccaatttttctactataggtgctac 32231233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 326
Target Start/End: Complemental strand, 4380081 - 4380016
Alignment:
Q  261 tcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||| ||||||   ||||||||||| |||| ||||||||||||| ||||| |||| ||||||    
T  4380081 tcttctctctacatgtataaaccacctaaccttagtttccaccatcttttctactatagttgctac 4380016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 327
Target Start/End: Original strand, 36340014 - 36340083
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctaca 327  Q
    ||||||||||| | |||| | ||||||||||| | || ||||||||||||| ||||  ||||||||||||    
T  36340014 aggtcttctctctccatgtctaaaccacctaaacctattttccaccatcttttctaatataggtgctaca 36340083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 415
Target Start/End: Original strand, 9599702 - 9599750
Alignment:
Q  367 ctaatcatatctcgcctggtcttaccacacattcaacacaacatcctca 415  Q
    ||||||||||| || || |||||||||| ||| ||||||||||||||||    
T  9599702 ctaatcatatcccgtctagtcttaccactcatccaacacaacatcctca 9599750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 314
Target Start/End: Original strand, 16822233 - 16822289
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctac 314  Q
    ||||||||||| |||||| |||||||||||||||  | |||| |||||||| |||||    
T  16822233 aggtcttctctctacatgtccaaaccacctaagccgagtttctaccatcttgtctac 16822289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 308
Target Start/End: Complemental strand, 17815537 - 17815493
Alignment:
Q  264 tctctatacatgcccaaaccacctaagcttactttccaccatctt 308  Q
    ||||| ||||||||||||||| |||||| || |||||||||||||    
T  17815537 tctctctacatgcccaaaccaactaagcctagtttccaccatctt 17815493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 19908250 - 19908318
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||| |||||| |||||||||||| ||||||| |||  ||||| ||||||| | ||| |||||||||||    
T  19908250 aggttttctctctacatgcccaaatcacctaaacttggtttcccccatcttttttactataggtgctac 19908318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 415
Target Start/End: Original strand, 34827406 - 34827458
Alignment:
Q  363 atttctaatcatatctcgcctggtcttaccacacattcaacacaacatcctca 415  Q
    |||||||||| ||| ||| || |||||||||| ||| ||||||||||||||||    
T  34827406 atttctaatcttatatcgtctagtcttaccactcatccaacacaacatcctca 34827458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 319
Target Start/End: Complemental strand, 51812591 - 51812535
Alignment:
Q  263 ttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccatag 319  Q
    |||||| |||||||||||| ||| ||||| || ||||||||||||| ||||| ||||    
T  51812591 ttctctctacatgcccaaatcacataagcctagtttccaccatcttttctactatag 51812535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 231 - 326
Target Start/End: Complemental strand, 29700374 - 29700279
Alignment:
Q  231 atctactatccttacggctgaatccaaaggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||| |||||||  | |||||||| |||||| ||| || |||||||||||||||||||  ||||||| ||||||| ||||| |||||||||||    
T  29700374 atctactctccttactacagaatccaatggtcttttctctatatgcccaaaccacctaagccaactttcctccatcttttctactataggtgctac 29700279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 262 - 326
Target Start/End: Complemental strand, 9695698 - 9695634
Alignment:
Q  262 cttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||| ||||||||||||||||||||||  | ||||||||||||| ||||| |||||||||||    
T  9695698 cttctctctacatgcccaaaccacctaagccgagtttccaccatcttttctactataggtgctac 9695634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 314
Target Start/End: Original strand, 35643814 - 35643868
Alignment:
Q  260 gtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctac 314  Q
    ||||||||| |||||||||||||||||||||| || ||||||||||||| |||||    
T  35643814 gtcttctctctacatgcccaaaccacctaagcatattttccaccatcttttctac 35643868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 324
Target Start/End: Original strand, 13171865 - 13171926
Alignment:
Q  263 ttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgct 324  Q
    |||||| || ||||||||||||||||||| || ||||||||||||| ||||| |||||||||    
T  13171865 ttctctttatatgcccaaaccacctaagcatattttccaccatcttttctactataggtgct 13171926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 45512709 - 45512774
Alignment:
Q  261 tcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||| || |||||||||||| ||||||||| |||||| |||||| ||||| |||||||||||    
T  45512709 tcttctctttatatgcccaaaccatctaagcttattttccatcatcttttctactataggtgctac 45512774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 326
Target Start/End: Original strand, 12491350 - 12491417
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| ||||||||||||||| |||||| || |||| |||| ||| ||||| |||||||||||    
T  12491350 ggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctac 12491417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 326
Target Start/End: Original strand, 18474173 - 18474239
Alignment:
Q  260 gtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||| ||||||| ||||||| |||||| || ||||||||||| | ||||| |||||||||||    
T  18474173 gtcttctctctacatgctcaaaccaactaagcctagtttccaccatcatttctactataggtgctac 18474239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 314
Target Start/End: Original strand, 41971991 - 41972045
Alignment:
Q  260 gtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctac 314  Q
    ||||||||| |||||| ||||||||||||| |||| ||||||||||||| |||||    
T  41971991 gtcttctctctacatgtccaaaccacctaaacttattttccaccatcttttctac 41972045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 79114 - 79081
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagc 291  Q
    ||||||||||||||||||||||||||||||||||    
T  79114 aggtcttctctatacatgcccaaaccacctaagc 79081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 327
Target Start/End: Complemental strand, 12611613 - 12611537
Alignment:
Q  251 aatccaaaggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctaca 327  Q
    |||||| |||| |||| | ||||| | |||||||||||||| || ||||||||||||| |||||  |||||||||||    
T  12611613 aatccacaggtgttctgtctacatacgcaaaccacctaagcctagtttccaccatcttttctactttaggtgctaca 12611537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 16917251 - 16917199
Alignment:
Q  262 cttctctatacatgcccaaaccacctaagcttactttccaccatcttctctac 314  Q
    ||||||| |||||||||||||||||||||| || ||| ||||||||| |||||    
T  16917251 cttctctttacatgcccaaaccacctaagcctagtttgcaccatcttttctac 16917199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 314
Target Start/End: Complemental strand, 30748528 - 30748472
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctac 314  Q
    ||||||||||| |||||||||||||||||||||| |   |||||||||||| |||||    
T  30748528 aggtcttctctctacatgcccaaaccacctaagccttgattccaccatcttttctac 30748472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 326
Target Start/End: Original strand, 41444549 - 41444605
Alignment:
Q  270 tacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||| ||||||||||||| | || ||||||||||||| ||||| |||||||||||    
T  41444549 tacatgtccaaaccacctaaacctagtttccaccatcttttctactataggtgctac 41444605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 326
Target Start/End: Complemental strand, 45419308 - 45419240
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||| ||| |||||||||||||||||||||  || |||  |||||||| ||||| |||||||||||    
T  45419308 aggtcttatctctacatgcccaaaccacctaagtctattttataccatcttttctactataggtgctac 45419240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 326
Target Start/End: Original strand, 2776441 - 2776508
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||||  |||||||||||||||||||||  | |||| |||||| | ||||| |||||||||||    
T  2776441 ggtcttctctcaacatgcccaaaccacctaagccgagtttctaccatcatttctacgataggtgctac 2776508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 322
Target Start/End: Complemental strand, 36545219 - 36545156
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtg 322  Q
    |||||||||| ||||||||||||||| |||||| || |||| |||| ||| ||||| |||||||    
T  36545219 ggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtg 36545156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 326
Target Start/End: Original strand, 36565457 - 36565520
Alignment:
Q  263 ttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||| ||||||||||||||| |||||| || |||| |||| ||| ||||| |||||||||||    
T  36565457 ttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctac 36565520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 191
Target Start/End: Complemental strand, 16917335 - 16917293
Alignment:
Q  149 tatagcttttcaaggtcttcttctacctttagtgatttaacta 191  Q
    ||||||||||| |||||||||||||||| ||||||||| ||||    
T  16917335 tatagcttttctaggtcttcttctacctgtagtgatttgacta 16917293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 414
Target Start/End: Complemental strand, 36069620 - 36069570
Alignment:
Q  364 tttctaatcatatctcgcctggtcttaccacacattcaacacaacatcctc 414  Q
    ||||||||| |||| || || |||||||||||||| |||||||||||||||    
T  36069620 tttctaatcttatcccgtctagtcttaccacacatccaacacaacatcctc 36069570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 36395160 - 36395229
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacct-aagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||||| ||||||||||||||| || |||| || |||| |||| ||| ||||| |||||||||||    
T  36395160 aggtcttctctctacatgcccaaaccatctaaagcctattttctaccaacttttctactataggtgctac 36395229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 326
Target Start/End: Complemental strand, 40813392 - 40813327
Alignment:
Q  261 tcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||| ||||||||||||||| |||| | || |||| |||| ||| ||||| |||||||||||    
T  40813392 tcttctctctacatgcccaaaccatctaaacctattttctaccaacttttctactataggtgctac 40813327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 43904876 - 43904947
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagc---ttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||||| |||||| |||||||||||||||   ||| ||||| ||||||| ||||| |||| ||||||    
T  43904876 aggtcttctctctacatgtccaaaccacctaagcttattattttcctccatcttttctactatagatgctac 43904947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 314
Target Start/End: Original strand, 17491832 - 17491888
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctac 314  Q
    ||||||||||| ||||| ||||||||||||||| ||| | |||||||| || |||||    
T  17491832 aggtcttctctctacatacccaaaccacctaagtttattgtccaccatattttctac 17491888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 415
Target Start/End: Original strand, 28300416 - 28300468
Alignment:
Q  363 atttctaatcatatctcgcctggtcttaccacacattcaacacaacatcctca 415  Q
    |||||||||| ||||||  || ||||||| |||||| ||||||||||||||||    
T  28300416 atttctaatcttatctcatctagtcttactacacatccaacacaacatcctca 28300468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 326
Target Start/End: Complemental strand, 36143436 - 36143368
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||| ||| || ||||||||||||||||||  || ||||||||||||  ||| | |||||||||||    
T  36143436 aggtcttttctctaaatgcccaaaccacctaagtctattttccaccatctattctgctataggtgctac 36143368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 326
Target Start/End: Complemental strand, 39946928 - 39946860
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||| | |||||| |||||||| |||||| || |||| |||| ||| ||||| |||||||||||    
T  39946928 aggtcttctttctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctac 39946860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 44681250 - 44681318
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||||| || ||  |||||||  ||||||||| ||||||||||||| ||||  |||||||||||    
T  44681250 aggtcttctctctagatttccaaaccttctaagcttattttccaccatcttttctattataggtgctac 44681318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 251 - 326
Target Start/End: Complemental strand, 33667294 - 33667219
Alignment:
Q  251 aatccaaaggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||| ||||||||||| |||||||||||||||||||||  || |||| |||||||| ||||| |||||||||||    
T  33667294 aatccacaggtcttctctctacatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctac 33667219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 326
Target Start/End: Original strand, 31636132 - 31636199
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| |||||||||||||||||||||  || |||| |||||||| ||||| |||||||||||    
T  31636132 ggtcttctctctacatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctac 31636199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 256 - 326
Target Start/End: Complemental strand, 28676668 - 28676598
Alignment:
Q  256 aaaggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||||||| |||||||| ||||||||||||  || ||||||||||||| ||||| |||| ||||||    
T  28676668 aaaggtcttctctctacatgccgaaaccacctaagactattttccaccatcttttctactatagctgctac 28676598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 216 - 314
Target Start/End: Complemental strand, 42199399 - 42199301
Alignment:
Q  216 actactgtccatattatctactatccttacggctgaatccaaaggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctac 314  Q
    |||||| ||||| | ||||||| |||||||  | ||||| | | ||||||||| |||||||||||||||||||||  || ||||||||||||| |||||    
T  42199399 actactctccatgtgatctactctccttactacagaatctacatgtcttctctctacatgcccaaaccacctaagtctagtttccaccatcttttctac 42199301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 326
Target Start/End: Original strand, 43558040 - 43558106
Alignment:
Q  260 gtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||| || |||||||||||||||||||||| ||||||||||||| ||||  |||| ||||||    
T  43558040 gtcttctctctatatgcccaaaccacctaagcttagtttccaccatcttttctattatagatgctac 43558106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 326
Target Start/End: Complemental strand, 43475311 - 43475243
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||||| |  || |||||||||||||||| || ||||||||||||| ||||| |||||||||||    
T  43475311 aggtcttctctctgaatacccaaaccacctaagcctagtttccaccatcttttctactataggtgctac 43475243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 4496454 - 4496387
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| ||||||||||||||| |||||| || |||| |||| ||| ||||| |||||||||||    
T  4496454 ggtcttctctctacatgcccaaaccatctaagcctattttctaccagcttttctactataggtgctac 4496387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 41833793 - 41833863
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatc--ttctctaccataggtgctac 326  Q
    ||||||| ||| |||||||||||||||||||||| ||  ||||||||||  |||| |||||||||||||||    
T  41833793 aggtcttgtctctacatgcccaaaccacctaagcatatgttccaccatcttttctataccataggtgctac 41833863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 326
Target Start/End: Original strand, 1287792 - 1287858
Alignment:
Q  260 gtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||| ||||||||||||||| |||||| || |||| |||| ||| ||||| |||||||||||    
T  1287792 gtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctac 1287858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 326
Target Start/End: Complemental strand, 1275332 - 1275267
Alignment:
Q  261 tcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||| ||||||||||||||| |||||| || |||| |||| ||| ||||| |||||||||||    
T  1275332 tcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctac 1275267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 15489706 - 15489771
Alignment:
Q  261 tcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||| ||||||||||||||| ||||||| | |||| |||||||| ||||| |||||| ||||    
T  15489706 tcttctctctacatgcccaaaccatctaagctgagtttcaaccatcttttctacaataggtactac 15489771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 18351118 - 18351187
Alignment:
Q  258 aggtcttctctataca-tgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||||| |||| |||||||||||||||||| || |||| ||||| || ||||| |||||||||||    
T  18351118 aggtcttctctctacaatgcccaaaccacctaagcctagtttctaccatattttctactataggtgctac 18351187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 326
Target Start/End: Complemental strand, 2713023 - 2712947
Alignment:
Q  250 gaatccaaaggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||| ||||||||||| |||||||||||||||||||||  || | || |||||||| |  || |||||||||||    
T  2713023 gaatccacaggtcttctctctacatgcccaaaccacctaagtctagtctctaccatcttttagactataggtgctac 2712947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 363 - 415
Target Start/End: Complemental strand, 21952329 - 21952277
Alignment:
Q  363 atttctaatcatatctcgcctggtcttaccacacattcaacacaacatcctca 415  Q
    |||||||||| ||||||| || |||||||||||||| |||| |||||||||||    
T  21952329 atttctaatcttatctcgtctagtcttaccacacatgcaacgcaacatcctca 21952277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 326
Target Start/End: Complemental strand, 34273098 - 34273030
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||||| ||||||||||||||| |||||| || |||| |||| ||| ||||  |||||||||||    
T  34273098 aggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctattataggtgctac 34273030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 14665784 - 14665717
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| |||||| |||||||| |||||| || |||| | || ||||||||| |||||||||||    
T  14665784 ggtcttctctctacatgtccaaaccatctaagcctattttctatcaacttctctactataggtgctac 14665717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 326
Target Start/End: Original strand, 16347590 - 16347657
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| |||||| |||||||| |||||| || |||| |||| ||| ||||| |||||||||||    
T  16347590 ggtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctac 16347657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 24178580 - 24178513
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||||  |||||||||||||| |||||| || |||| |||| ||| ||||| |||||||||||    
T  24178580 ggtcttctctccacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctac 24178513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 326
Target Start/End: Original strand, 28977071 - 28977138
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| ||||||| ||||||| |||||| || |||| |||| ||| ||||| |||||||||||    
T  28977071 ggtcttctctctacatgcacaaaccatctaagcctattttctaccaacttttctactataggtgctac 28977138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 38685037 - 38684970
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| |||||| |||||||| |||||| || |||| |||| ||| ||||| |||||||||||    
T  38685037 ggtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctac 38684970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 326
Target Start/End: Complemental strand, 14667816 - 14667766
Alignment:
Q  276 cccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||||||||  || ||||||||||||| ||||| |||||||||||    
T  14667816 cccaaaccacctaagtctattttccaccatcttttctactataggtgctac 14667766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 3775195 - 3775256
Alignment:
Q  147 cttatagcttttcaaggtcttcttctacctttagtgatttaactactctccatattatctac 208  Q
    ||||||| ||||| |||||||||||| ||| ||||||||| |||||| ||||| | ||||||    
T  3775195 cttatagtttttctaggtcttcttctgcctctagtgatttgactactatccatttaatctac 3775256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 308
Target Start/End: Complemental strand, 6889071 - 6889014
Alignment:
Q  251 aatccaaaggtcttctctatacatgcccaaaccacctaagcttactttccaccatctt 308  Q
    |||||| | ||||||||| |||||| ||||||||| ||||| || |||||||||||||    
T  6889071 aatccacaagtcttctctctacatgtccaaaccacttaagcctattttccaccatctt 6889014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 400
Target Start/End: Original strand, 8492627 - 8492664
Alignment:
Q  363 atttctaatcatatctcgcctggtcttaccacacattc 400  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  8492627 atttctaattatatctcgtctggtcttaccacacattc 8492664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 327
Target Start/End: Complemental strand, 14749386 - 14749309
Alignment:
Q  250 gaatccaaaggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctaca 327  Q
    ||||||| ||||||||||| |||||| |||||||| |||||  || |||| ||||  || ||||| ||||||||||||    
T  14749386 gaatccacaggtcttctctctacatgtccaaaccatctaagtctagtttctaccaatttttctactataggtgctaca 14749309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 326
Target Start/End: Complemental strand, 27944 - 27896
Alignment:
Q  278 caaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||||||| || |||||| |||||| ||||| |||||||||||    
T  27944 caaaccacctaagcctattttccatcatcttttctactataggtgctac 27896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 326
Target Start/End: Complemental strand, 79584 - 79516
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||||| |||||| |||||||||||||   |  ||||||||||||| ||||| |||||| ||||    
T  79584 aggtcttctctctacatgtccaaaccacctaattatgttttccaccatcttttctactataggtactac 79516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 326
Target Start/End: Complemental strand, 6859460 - 6859384
Alignment:
Q  250 gaatccaaaggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||| | ||||||||| ||| || |||||||||||| || |  |||||||||||||||  || |||||||||||    
T  6859460 gaatccacaagtcttctctctacgtgtccaaaccacctatgcctgttttccaccatcttcttcactataggtgctac 6859384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 319
Target Start/End: Original strand, 12492596 - 12492656
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccatag 319  Q
    |||||||||| ||||||||||||||| |||||| || |||| |||| ||| ||||| ||||    
T  12492596 ggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactatag 12492656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 317
Target Start/End: Original strand, 21193858 - 21193910
Alignment:
Q  265 ctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccat 317  Q
    |||| |||||||||||| ||||||||  || |||||||||| |||||||||||    
T  21193858 ctctctacatgcccaaatcacctaagtctagtttccaccatattctctaccat 21193910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 308
Target Start/End: Original strand, 38578734 - 38578782
Alignment:
Q  260 gtcttctctatacatgcccaaaccacctaagcttactttccaccatctt 308  Q
    ||||||||| ||||||| ||||||||||||| ||| |||| ||||||||    
T  38578734 gtcttctctttacatgctcaaaccacctaagtttagtttctaccatctt 38578782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 252 - 326
Target Start/End: Complemental strand, 8180857 - 8180783
Alignment:
Q  252 atccaaaggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||| ||||||||||| ||||||||||||||| ||||||||| |||| |||| ||| ||||| |||||||||||    
T  8180857 atccacaggtcttctctctacatgcccaaaccatctaagcttattttctaccaacttttctactataggtgctac 8180783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 318
Target Start/End: Original strand, 13240958 - 13241016
Alignment:
Q  260 gtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccata 318  Q
    ||||||||| |||||||||||||||||||||| || ||||||||||||| |||| ||||    
T  13240958 gtcttctctctacatgcccaaaccacctaagcctagtttccaccatcttttctaacata 13241016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 326
Target Start/End: Complemental strand, 12141615 - 12141547
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||| | ||| |||||||||||||||||| |  ||||||||||||| ||||| |||||||||||    
T  12141615 aggtcttctttctacgtgcccaaaccacctaagcctcttttccaccatcttttctactataggtgctac 12141547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 326
Target Start/End: Complemental strand, 19024239 - 19024183
Alignment:
Q  270 tacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||| |||||||||||||||||||||||||||||||| || |  |||||||||||    
T  19024239 tacatgtccaaaccacctaagcttactttccaccatcttttcaaatataggtgctac 19024183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 326
Target Start/End: Original strand, 43238305 - 43238372
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| ||||||||||||||| |||||| || |||| |||| ||| ||||| |||||||||||    
T  43238305 ggtcttctctttacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctac 43238372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 326
Target Start/End: Complemental strand, 25834758 - 25834684
Alignment:
Q  252 atccaaaggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||| ||||||||||| |||||| |||||||| |||||| || |||| |||| ||| ||||| |||||||||||    
T  25834758 atccacaggtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctac 25834684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 326
Target Start/End: Complemental strand, 18958959 - 18958910
Alignment:
Q  277 ccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||||||||| || ||||||||||||| ||||| |||||||||||    
T  18958959 ccaaaccacctaagcctattttccaccatcttttctactataggtgctac 18958910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 299
Target Start/End: Complemental strand, 42543314 - 42543265
Alignment:
Q  250 gaatccaaaggtcttctctatacatgcccaaaccacctaagcttactttc 299  Q
    ||||||| ||||||||||| ||||||||||||||||||||| ||| ||||    
T  42543314 gaatccacaggtcttctctgtacatgcccaaaccacctaagtttagtttc 42543265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 363 - 415
Target Start/End: Original strand, 9556672 - 9556724
Alignment:
Q  363 atttctaatcatatctcgcctggtcttaccacacattcaacacaacatcctca 415  Q
    ||||||||||||||| || ||  ||||||||||||| ||||||||||||||||    
T  9556672 atttctaatcatatcccgtctaatcttaccacacatccaacacaacatcctca 9556724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 43752158 - 43752226
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||||| |||||| ||||| ||||||||| || |||| |||| ||| ||||| |||||||||||    
T  43752158 aggtcttctctctacatgtccaaatcacctaagcctattttctaccaccttttctactataggtgctac 43752226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 326
Target Start/End: Original strand, 11992320 - 11992387
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| || ||| |||||||| ||||||||| |||| |||| ||| ||||| |||||||||||    
T  11992320 ggtcttctctctatatgtccaaaccatctaagcttattttctaccaacttttctactataggtgctac 11992387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 36183521 - 36183454
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| |||||||| |||||| ||||| ||| |||| |||| ||| ||||| |||||||||||    
T  36183521 ggtcttctctctacatgccgaaaccaactaagattattttctaccaacttttctactataggtgctac 36183454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 326
Target Start/End: Complemental strand, 38435021 - 38434954
Alignment:
Q  260 gtcttctctatacatgcccaaaccacctaagct-tactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||| ||||||||||||||||| ||  | || ||||||||||||| ||||| |||||||||||    
T  38435021 gtcttctctttacatgcccaaaccacccaaagtctagtttccaccatcttttctactataggtgctac 38434954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 326
Target Start/End: Original strand, 38452897 - 38452964
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| ||||||||||||||| |||||| || |||| |||| ||| ||||| |||| ||||||    
T  38452897 ggtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttctactatagatgctac 38452964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 326
Target Start/End: Original strand, 45367837 - 45367904
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| |||||| |||||||| ||||| ||| |||| |||| ||| ||||| |||||||||||    
T  45367837 ggtcttctctctacatgtccaaaccatctaaggttattttctaccaacttttctactataggtgctac 45367904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 326
Target Start/End: Complemental strand, 2610657 - 2610591
Alignment:
Q  260 gtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||| ||||||||||||||| |||||| || |||| |||| ||| || || |||||||||||    
T  2610657 gtcttctctctacatgcccaaaccatctaagcctattttctaccaacttttccactataggtgctac 2610591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 308
Target Start/End: Complemental strand, 3481212 - 3481162
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatctt 308  Q
    ||||||||||| |||||| ||||||||||||||| |  |||||||||||||    
T  3481212 aggtcttctctctacatgtccaaaccacctaagcctgttttccaccatctt 3481162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 14197375 - 14197437
Alignment:
Q  260 gtcttctctatacatgcccaaaccacct-aagcttactttccaccatcttctctaccataggt 321  Q
    |||||| || |||||||||||||||||| |||| || ||||||||||||| ||||| ||||||    
T  14197375 gtcttcactctacatgcccaaaccacctaaagcctagtttccaccatcttttctactataggt 14197437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 305
Target Start/End: Original strand, 9556582 - 9556627
Alignment:
Q  260 gtcttctctatacatgcccaaaccacctaagcttactttccaccat 305  Q
    ||||||||| |||||||| ||||||||||||| || ||||||||||    
T  9556582 gtcttctctctacatgcctaaaccacctaagcctattttccaccat 9556627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 326
Target Start/End: Complemental strand, 11412777 - 11412724
Alignment:
Q  273 atgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| |||||||| || |||||||||| || ||||| |||||||||||    
T  11412777 atgcccaaacaacctaagcctattttccaccatattttctactataggtgctac 11412724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 12026216 - 12026264
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatc 306  Q
    ||||||||||| ||||||  |||||||||||||| || |||||||||||    
T  12026216 aggtcttctctctacatggtcaaaccacctaagcctagtttccaccatc 12026264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 414
Target Start/End: Original strand, 37393470 - 37393522
Alignment:
Q  363 atttctaatcatatctcgcctggtcttaccaca-cattcaacacaacatcctc 414  Q
    |||||| ||||||||||  || ||||||||||| |||||||||||||||||||    
T  37393470 atttctgatcatatctcatctagtcttaccacaacattcaacacaacatcctc 37393522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 322
Target Start/End: Original strand, 41763253 - 41763317
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtg 322  Q
    ||||||||||| | |||| ||||||||||||||| || |||| |||| ||| ||||| |||||||    
T  41763253 aggtcttctctctgcatgtccaaaccacctaagcctattttctaccaacttttctactataggtg 41763317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 258 - 326
Target Start/End: Complemental strand, 33084129 - 33084061
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||||| ||||| |||||||||||||||  || |||| |||||||| |||||||||||||||||    
T  33084129 aggtcttctctctacattcccaaaccacctaagtctagtttctaccatcttttctaccataggtgctac 33084061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 14389379 - 14389446
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    ||||||||||| |||||| |||||||||||||| ||  ||||||||||||| ||||| |||||||||||    
T  14389379 aggtcttctctctacatgtccaaaccacctaag-tttgtttccaccatcttttctacgataggtgctac 14389446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 314
Target Start/End: Original strand, 9593919 - 9593973
Alignment:
Q  260 gtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctac 314  Q
    ||||||||| |||||||||||||||||||||| || |||| |||||||| |||||    
T  9593919 gtcttctctctacatgcccaaaccacctaagcctattttctaccatcttttctac 9593973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 21870201 - 21870255
Alignment:
Q  155 ttttcaaggtcttcttctacctttagtgatttaactactctccatattatctact 209  Q
    ||||| |||||||| ||| ||||||||||||| |||||||||||| |||||||||    
T  21870201 ttttctaggtcttcctctgcctttagtgatttgactactctccatcttatctact 21870255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 31818685 - 31818623
Alignment:
Q  147 cttatagcttttcaaggtcttcttctacctttagtgatttaactactctccatattatctact 209  Q
    ||||||| ||||| ||||||||| |||||||||||||| | ||||| |||||||| |||||||    
T  31818685 cttatagtttttctaggtcttctcctacctttagtgatctcactaccctccatatgatctact 31818623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 306
Target Start/End: Original strand, 33997765 - 33997801
Alignment:
Q  270 tacatgcccaaaccacctaagcttactttccaccatc 306  Q
    ||||||||||||||||||||||||| |||||||||||    
T  33997765 tacatgcccaaaccacctaagcttagtttccaccatc 33997801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 326
Target Start/End: Original strand, 5258360 - 5258427
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| |||||| |||||||| |||||| || |||| |||| ||| ||||| |||||||||||    
T  5258360 ggtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctac 5258427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 258 - 321
Target Start/End: Complemental strand, 24665881 - 24665818
Alignment:
Q  258 aggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggt 321  Q
    ||||||||||| |||||| ||||||||||||||| || |||| ||||| || ||||| ||||||    
T  24665881 aggtcttctctctacatgtccaaaccacctaagcctattttctaccatattttctactataggt 24665818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 28085446 - 28085379
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| |||||| |||||||| |||||| || |||| |||| ||| ||||| |||||||||||    
T  28085446 ggtcttctctctacatggccaaaccatctaagcctattttctaccaacttttctactataggtgctac 28085379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 326
Target Start/End: Complemental strand, 2079408 - 2079343
Alignment:
Q  261 tcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||| ||||| || ||||||| ||||| || ||||||||||||| ||||| |||| ||||||    
T  2079408 tcttctctctacatacctaaaccacttaagcctattttccaccatcttttctactatagatgctac 2079343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 4948529 - 4948578
Alignment:
Q  265 ctctatacatgcccaaaccacctaagcttactttccaccatcttctctac 314  Q
    ||||||||| |||||||||||||||||  | ||||||||||||| |||||    
T  4948529 ctctatacaggcccaaaccacctaagccgaatttccaccatcttttctac 4948578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 4955500 - 4955549
Alignment:
Q  265 ctctatacatgcccaaaccacctaagcttactttccaccatcttctctac 314  Q
    ||||||||| |||||||||||||||||  | ||||||||||||| |||||    
T  4955500 ctctatacaggcccaaaccacctaagccgaatttccaccatcttttctac 4955549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 326
Target Start/End: Complemental strand, 8364631 - 8364575
Alignment:
Q  270 tacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||||||||||||||| || |||| |||| ||| ||||| |||| ||||||    
T  8364631 tacatgcccaaaccacctaagcctattttcaaccaccttttctactatagttgctac 8364575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 325
Target Start/End: Complemental strand, 11866 - 11802
Alignment:
Q  261 tcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgcta 325  Q
    |||||||| ||||||||||||||||||||||  | || | |||||||| ||||| ||||||||||    
T  11866 tcttctctctacatgcccaaaccacctaagccgagttcctaccatcttttctacaataggtgcta 11802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 326
Target Start/End: Original strand, 1160 - 1227
Alignment:
Q  259 ggtcttctctatacatgcccaaaccacctaagcttactttccaccatcttctctaccataggtgctac 326  Q
    |||||||||| |||||| |||||||| |||||| || |||| |||| ||| ||||| |||||||||||    
T  1160 ggtcttctctctacatggccaaaccatctaagcctattttctaccaacttttctactataggtgctac 1227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University