View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2800R-Insertion-7 (Length: 362)

Name: NF2800R-Insertion-7
Description: NF2800R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2800R-Insertion-7
NF2800R-Insertion-7
[»] chr5 (15 HSPs)
chr5 (282-362)||(10223282-10223362)
chr5 (9-73)||(10223667-10223731)
chr5 (162-248)||(10223442-10223529)
chr5 (144-222)||(5361503-5361582)
chr5 (71-222)||(6641938-6642095)
chr5 (138-222)||(6642070-6642155)
chr5 (138-222)||(8942882-8942967)
chr5 (71-222)||(27496022-27496179)
chr5 (114-222)||(30004075-30004184)
chr5 (138-222)||(42092228-42092313)
chr5 (123-222)||(28574661-28574761)
chr5 (145-218)||(8943218-8943292)
chr5 (138-223)||(29440293-29440379)
chr5 (138-222)||(2802892-2802977)
chr5 (138-222)||(21250274-21250359)
[»] chr2 (15 HSPs)
chr2 (113-222)||(7438420-7438530)
chr2 (129-222)||(5482889-5482983)
chr2 (113-222)||(43671260-43671370)
chr2 (130-222)||(7881634-7881727)
chr2 (138-222)||(11974166-11974251)
chr2 (138-222)||(29683594-29683679)
chr2 (138-222)||(33616014-33616099)
chr2 (138-222)||(45638077-45638162)
chr2 (113-222)||(28582459-28582569)
chr2 (137-222)||(34334547-34334633)
chr2 (71-163)||(5483015-5483112)
chr2 (138-222)||(33615756-33615841)
chr2 (138-210)||(40343703-40343775)
chr2 (113-181)||(4603595-4603663)
chr2 (111-163)||(28182263-28182315)
[»] chr8 (26 HSPs)
chr8 (113-222)||(9779115-9779225)
chr8 (138-222)||(29276637-29276722)
chr8 (113-222)||(15891761-15891871)
chr8 (137-222)||(29457135-29457221)
chr8 (138-222)||(6121524-6121609)
chr8 (138-223)||(9117518-9117604)
chr8 (113-222)||(15315176-15315286)
chr8 (113-222)||(15495545-15495655)
chr8 (137-222)||(31826850-31826936)
chr8 (113-222)||(42691913-42692023)
chr8 (138-222)||(23404083-23404168)
chr8 (123-222)||(15891648-15891748)
chr8 (113-181)||(27702445-27702513)
chr8 (139-222)||(27702602-27702686)
chr8 (111-163)||(29218481-29218533)
chr8 (144-222)||(31827161-31827240)
chr8 (113-222)||(23275339-23275449)
chr8 (113-222)||(23403826-23403936)
chr8 (113-222)||(35435388-35435498)
chr8 (137-222)||(35435584-35435670)
chr8 (71-222)||(7080-7237)
chr8 (138-222)||(22444621-22444706)
chr8 (138-222)||(44728126-44728211)
chr8 (138-222)||(44728390-44728475)
chr8 (138-222)||(15315117-15315201)
chr8 (138-222)||(15495486-15495570)
[»] chr1 (20 HSPs)
chr1 (123-222)||(4965046-4965146)
chr1 (122-223)||(5739476-5739578)
chr1 (138-222)||(29987221-29987306)
chr1 (144-222)||(1102618-1102697)
chr1 (113-223)||(15615382-15615493)
chr1 (117-223)||(32712181-32712288)
chr1 (71-222)||(1102678-1102835)
chr1 (138-222)||(20491720-20491805)
chr1 (138-222)||(39834008-39834093)
chr1 (113-241)||(18088066-18088197)
chr1 (144-222)||(20492020-20492099)
chr1 (147-222)||(41810951-41811026)
chr1 (113-222)||(4765016-4765126)
chr1 (137-222)||(4765100-4765186)
chr1 (129-222)||(41810745-41810839)
chr1 (129-222)||(45721147-45721241)
chr1 (129-222)||(49113167-49113261)
chr1 (111-164)||(4975013-4975066)
chr1 (138-221)||(18030544-18030628)
chr1 (113-181)||(29987323-29987391)
[»] chr7 (17 HSPs)
chr7 (113-222)||(45443365-45443475)
chr7 (129-222)||(48840026-48840119)
chr7 (113-222)||(44941188-44941298)
chr7 (123-223)||(18808102-18808203)
chr7 (144-222)||(37042994-37043073)
chr7 (113-222)||(8919567-8919677)
chr7 (138-222)||(18942313-18942398)
chr7 (138-222)||(42430633-42430718)
chr7 (138-222)||(42759217-42759302)
chr7 (113-181)||(45203758-45203826)
chr7 (114-181)||(29036317-29036384)
chr7 (113-222)||(22563895-22564005)
chr7 (113-163)||(22642031-22642081)
chr7 (138-222)||(3173240-3173325)
chr7 (138-222)||(47193512-47193597)
chr7 (138-222)||(48840252-48840337)
chr7 (171-222)||(47332353-47332405)
[»] chr3 (15 HSPs)
chr3 (113-222)||(10820298-10820408)
chr3 (137-222)||(33623357-33623443)
chr3 (138-222)||(13712307-13712392)
chr3 (138-222)||(17579762-17579847)
chr3 (113-164)||(29230972-29231023)
chr3 (113-222)||(11871472-11871582)
chr3 (71-163)||(11218195-11218292)
chr3 (123-222)||(11218258-11218358)
chr3 (114-165)||(23232315-23232366)
chr3 (138-220)||(48517931-48518014)
chr3 (111-181)||(47220346-47220416)
chr3 (138-222)||(10820238-10820323)
chr3 (138-222)||(17580068-17580153)
chr3 (138-221)||(8112812-8112896)
chr3 (144-222)||(54924091-54924168)
[»] chr4 (22 HSPs)
chr4 (129-222)||(50523077-50523171)
chr4 (138-218)||(18598212-18598293)
chr4 (143-222)||(21956040-21956120)
chr4 (123-222)||(40998185-40998284)
chr4 (137-222)||(40998429-40998515)
chr4 (138-222)||(18598537-18598622)
chr4 (138-222)||(25154799-25154884)
chr4 (138-222)||(29031282-29031367)
chr4 (138-222)||(29043401-29043486)
chr4 (123-222)||(13846613-13846713)
chr4 (144-222)||(34979497-34979576)
chr4 (144-222)||(40998125-40998204)
chr4 (113-223)||(41898194-41898305)
chr4 (137-222)||(21956368-21956454)
chr4 (144-222)||(25363566-25363647)
chr4 (129-222)||(41898136-41898229)
chr4 (138-222)||(14966429-14966514)
chr4 (138-222)||(15631340-15631425)
chr4 (114-163)||(20421227-20421276)
chr4 (114-222)||(25154602-25154711)
chr4 (144-223)||(6112013-6112093)
chr4 (123-222)||(41898318-41898418)
[»] scaffold0062 (1 HSPs)
scaffold0062 (138-222)||(11733-11818)
[»] scaffold0182 (2 HSPs)
scaffold0182 (71-181)||(22311-22426)
scaffold0182 (144-223)||(22449-22529)
[»] scaffold0051 (1 HSPs)
scaffold0051 (144-222)||(60491-60570)
[»] chr6 (3 HSPs)
chr6 (144-222)||(24012518-24012597)
chr6 (114-181)||(33040915-33040982)
chr6 (135-222)||(33040998-33041086)
[»] scaffold0220 (1 HSPs)
scaffold0220 (123-222)||(21975-22075)


Alignment Details
Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 282 - 362
Target Start/End: Complemental strand, 10223362 - 10223282
Alignment:
Q  282 cttactcagaatttcaatcttaaatttctaaagtcaaatttgatgcctaacacttctaaaatgttatacttttttctttaa 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  10223362 cttactcagaatttcaatcttaaatttctaaagtcaaatttgatgcctagcacttctaaaatgttttacttttttctttaa 10223282  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 10223731 - 10223667
Alignment:
Q  9 gtgtctgcgttgcggcggcgggtgggtggtgccggcggtgttggagcaacgatggcttccatttt 73  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  10223731 gtgtctgcgttgcggcggcgggtgggtggtgccggcggtggtggagcaacgatagcttccatttt 10223667  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 10223529 - 10223442
Alignment:
Q  162 aaaaatctgtctgaaaccttcgaac-ttaaaacacctatctaaaacaaacatgaaacttaaaatctatccaaaacaaactcgtaattt 248  Q
    |||||||| |||||||| ||||||  ||||| || ||||||||||||||||||||||||||||| ||||  ||||||||||| |||||    
T  10223529 aaaaatctatctgaaactttcgaaaattaaagcatctatctaaaacaaacatgaaacttaaaatttatctgaaacaaactcgaaattt 10223442  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 5361503 - 5361582
Alignment:
Q  144 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    |||||||||||||||||||| ||||| ||||||||||| | ||||||||  | |||||| ||||||||||| ||||||||    
T  5361503 aaacaaactcgaaatttaaagaatctatctgaaaccttagaaacttaaatgatctatctgaaacaaacatgcaacttaaa 5361582  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 222
Target Start/End: Original strand, 6641938 - 6642095
Alignment:
Q  71 tttcgagtttattttagataagtcactcctatcaacatccgt-----caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaa 165  Q
    |||||||||||||| ||||| |||  | |||||||| |||||     |||||||||||||||| ||| ||  ||||  |||||||||||||| |||||      
T  6641938 tttcgagtttatttcagataggtcctttctatcaacctccgttaagccaaagttgatttgatagaaaggaactatctgaaacaaactcgaaacttaaagg 6642037  T
Q  166 atctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    | || ||||||||||| | ||||||||  |||||||  ||||||||  ||||||||||    
T  6642038 acctatctgaaaccttagaaacttaaaggacctatccgaaacaaactcgaaacttaaa 6642095  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 6642070 - 6642155
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    ||||| |||||||||||||| |||||  | || ||||||||||| ||| ||||||  ||||||||||||||||| || ||||||||    
T  6642070 tatccgaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaaggacctatctaaaacaaacgtggaacttaaa 6642155  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 8942967 - 8942882
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    ||||| |||||||||||||| |||||| | || | ||||||||| ||| ||||||  |||||| | ||||||||||||||||||||    
T  8942967 tatccgaaacaaactcgaaacttaaaagacctatatgaaaccttagaaacttaaaggacctatatgaaacaaacatgaaacttaaa 8942882  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 222
Target Start/End: Original strand, 27496022 - 27496179
Alignment:
Q  71 tttcgagtttattttagataagtcactcctatcaacatccgt-----caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaa 165  Q
    |||||||||| ||||||||| |||  | |||||||| |||||     |||||||||||||||| ||| ||  ||||  |||||||||||||||||||| |    
T  27496022 tttcgagtttgttttagataggtcctttctatcaacctccgttaagccaaagttgatttgatagaaaggacctatctgaaacaaactcgaaatttaaaga 27496121  T
Q  166 atctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    | || ||| ||||||| | ||||||||  || ||||  ||||||||  ||||||||||    
T  27496122 acctatctcaaaccttagaaacttaaaggacatatccgaaacaaactcgaaacttaaa 27496179  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 222
Target Start/End: Complemental strand, 30004184 - 30004075
Alignment:
Q  114 aaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacat 212  Q
    |||||||||| |||| ||||||| ||||  ||| ||| ||||||||||||  | || ||||||||||| | ||||||||| || ||||| ||||||||      
T  30004184 aaagttgattcgatagaaatgatctatctgaaataaattcgaaatttaaaggacctatctgaaaccttagaaacttaaaagacatatctgaaacaaactc 30004085  T
Q  213 gaaacttaaa 222  Q
    ||||||||||    
T  30004084 gaaacttaaa 30004075  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 42092228 - 42092313
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    ||||| |||||||||  ||| |||||| | || ||||||||||| ||| ||||||  | |||||||||||||||||||||||||||    
T  42092228 tatccgaaacaaacttcaaacttaaaagacctatctgaaaccttagaaacttaaaggatctatctaaaacaaacatgaaacttaaa 42092313  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 28574661 - 28574761
Alignment:
Q  123 ttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaa 221  Q
    |||||| ||||||  ||||  |||||||||||||| |||||  | || ||||||||||| ||| ||||||| | |||||| ||||||| |||||||||||    
T  28574661 ttgatagaaatgacctatctgaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaaagatctatctgaaacaaatatgaaacttaa 28574760  T
Q  222 a 222  Q
    |    
T  28574761 a 28574761  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 8943218 - 8943292
Alignment:
Q  145 aacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaact 218  Q
    ||||||||||||| ||||| || || ||||||||||| | ||||||||  | |||||| ||||||||||||||||    
T  8943218 aacaaactcgaaacttaaagaacctatctgaaaccttagaaacttaaaggatctatctgaaacaaacatgaaact 8943292  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 29440293 - 29440379
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaaa 223  Q
    ||||| |||||||||| ||| ||||||||  | |||||||||||  || ||||||  | |||||||||||||| |||||||||||||    
T  29440293 tatccgaaacaaactccaaacttaaaaaacatatctgaaaccttaaaaacttaaaggatctatctaaaacaaatatgaaacttaaaa 29440379  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 2802977 - 2802892
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    ||||| |||||||||| ||| |||||  | || ||| ||||||| ||| ||||||| | |||||| ||||||||||||||||||||    
T  2802977 tatccgaaacaaactccaaacttaaaggacctatctaaaaccttagaaacttaaaagatctatctgaaacaaacatgaaacttaaa 2802892  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 21250359 - 21250274
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    ||||| ||||||||||||||  ||||  |||| ||||||||||| ||| ||| ||  |||||||| |||||||| |||||||||||    
T  21250359 tatccgaaacaaactcgaaacataaaggatctatctgaaaccttagaaactttaaggacctatctgaaacaaacctgaaacttaaa 21250274  T

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Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 113 - 222
Target Start/End: Original strand, 7438420 - 7438530
Alignment:
Q  113 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaaca 211  Q
    ||||||| |||||||| ||| ||| ||||  ||||||||||||||||||||  | || ||||||||||| ||| ||||||| |||||||||||||||||     
T  7438420 caaagtttatttgatagaaaggatctatctgaaacaaactcgaaatttaaaggacctatctgaaaccttagaaacttaaaagacctatctaaaacaaacg 7438519  T
Q  212 tgaaacttaaa 222  Q
    |||||||||||    
T  7438520 tgaaacttaaa 7438530  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 5482983 - 5482889
Alignment:
Q  129 taaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    |||| ||| ||||| |||||||||||||| |||||| | || ||||||||||| | ||||||||  | |||||| ||||||||||||||||||||    
T  5482983 taaaggatctatccgaaacaaactcgaaacttaaaacacctatctgaaaccttagaaacttaaaggatctatctgaaacaaacatgaaacttaaa 5482889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 43671370 - 43671260
Alignment:
Q  113 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 211  Q
    |||||||||||||||| ||| ||  ||||  ||||||||| |||| |||||| | || ||||||||||| | ||||||||| |||||||  ||||||||     
T  43671370 caaagttgatttgatagaaaggacctatctgaaacaaacttgaaacttaaaagacctatctgaaaccttagaaacttaaaagacctatccgaaacaaact 43671271  T
Q  212 tgaaacttaaa 222  Q
     ||||||||||    
T  43671270 cgaaacttaaa 43671260  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 7881727 - 7881634
Alignment:
Q  130 aaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    |||||| |||| |||||||||||||||| |||||  |||| ||||||||||| | || ||||||  ||||| | |||||||| |||||||||||    
T  7881727 aaatgacatattcaaaacaaactcgaaacttaaaggatctatctgaaaccttagaaatttaaaaggcctatttgaaacaaacgtgaaacttaaa 7881634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 11974166 - 11974251
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt-cgaacttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    ||||| ||||||||||||||||||||  || | |||||||||||   ||||||||| || ||||| |||||||| |||||||||||    
T  11974166 tatccgaaacaaactcgaaatttaaaggatttatctgaaaccttataaacttaaaagacatatctgaaacaaacgtgaaacttaaa 11974251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 29683679 - 29683594
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    |||||||||||||||||||| |||||  | || ||||||||||| | ||||||||  |||||||| |||||||| ||||| |||||    
T  29683679 tatccaaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaagaacctatctgaaacaaacgtgaaatttaaa 29683594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 33616014 - 33616099
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    ||||| |||||||||| ||| |||||  | || ||||||||||| ||| ||||||  | |||||||||||||||||||||||||||    
T  33616014 tatccgaaacaaactcaaaacttaaagtacctatctgaaaccttagaaacttaaaggatctatctaaaacaaacatgaaacttaaa 33616099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 45638162 - 45638077
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    ||||| |||||||||||||| |||||  | || |||||||| || ||| ||||||  |||||||| ||||||||||||||||||||    
T  45638162 tatccgaaacaaactcgaaacttaaaggacctatctgaaacgttagaaacttaaaggacctatctgaaacaaacatgaaacttaaa 45638077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 28582569 - 28582459
Alignment:
Q  113 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 211  Q
    |||||||||||||||| ||||||  ||||  |||||||||||||| |||||  | || ||||||||| | | ||||||||  |||||||  ||||||||     
T  28582569 caaagttgatttgatagaaatgacctatctgaaacaaactcgaaacttaaaggacctatctgaaaccatagaaacttaaaggacctatccgaaacaaact 28582470  T
Q  212 tgaaacttaaa 222  Q
     ||||||||||    
T  28582469 cgaaacttaaa 28582459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 222
Target Start/End: Complemental strand, 34334633 - 34334547
Alignment:
Q  137 atatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    |||||| |||||||||||||| |||||  | || |||||||||||  || ||||||  | |||||| ||||||||||||||||||||    
T  34334633 atatcccaaacaaactcgaaacttaaatgacctatctgaaaccttaaaaacttaaaggatctatctgaaacaaacatgaaacttaaa 34334547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 163
Target Start/End: Original strand, 5483015 - 5483112
Alignment:
Q  71 tttcgagtttattttagataagtcactcctatcaacatccgt-----caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaa 163  Q
    |||||||||| ||| |||||||||| | |||||||| |||||     |||||||||||||||| ||||||  ||||  |||||||||| ||| |||||    
T  5483015 tttcgagtttgtttcagataagtcatttctatcaacctccgttaaaccaaagttgatttgatagaaatgacctatctgaaacaaactcaaaacttaaa 5483112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 33615841 - 33615756
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    ||||| ||||||||||||||||||||  |||| | ||||||||| | ||||||||  || ||||| ||| |||| |||||||||||    
T  33615841 tatccgaaacaaactcgaaatttaaaggatctatatgaaaccttagaaacttaaagaacttatctgaaataaacgtgaaacttaaa 33615756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 210
Target Start/End: Original strand, 40343703 - 40343775
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaac 210  Q
    ||||| |||||||||||||| ||||| |  || ||||||||||| ||| |||||| ||||||||||||||||||    
T  40343703 tatccgaaacaaactcgaaacttaaagac-ctatctgaaaccttagaaacttaaagcacctatctaaaacaaac 40343775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 181
Target Start/End: Complemental strand, 4603663 - 4603595
Alignment:
Q  113 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt 181  Q
    |||||||||||||||| ||||||  || |  |||||||||||||| ||||| || || |||||||||||    
T  4603663 caaagttgatttgatagaaatgacctaactgaaacaaactcgaaaattaaagaacctatctgaaacctt 4603595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 28182315 - 28182263
Alignment:
Q  111 gtcaaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaa 163  Q
    |||||||||||||||||| ||||||   ||| ||||||||||||||| |||||    
T  28182315 gtcaaagttgatttgatagaaatgaccaatctaaaacaaactcgaaacttaaa 28182263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 113 - 222
Target Start/End: Original strand, 9779115 - 9779225
Alignment:
Q  113 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaaca 211  Q
    |||||||||||||||| ||| ||| ||||  |||||||||||||| |||||  | || |||||||||||  || ||||||  ||||||||||||||||||    
T  9779115 caaagttgatttgatagaaaggatctatctgaaacaaactcgaaacttaaaggacctatctgaaaccttaaaaacttaaaggacctatctaaaacaaaca 9779214  T
Q  212 tgaaacttaaa 222  Q
    |||||||||||    
T  9779215 tgaaacttaaa 9779225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 29276722 - 29276637
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    |||||||||||||||||||| ||||| || || ||||||||||| | ||||||||  |||||||| ||||||||||||||||||||    
T  29276722 tatccaaaacaaactcgaaacttaaagaacctatctgaaaccttagaaacttaaaggacctatctgaaacaaacatgaaacttaaa 29276637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 222
Target Start/End: Original strand, 15891761 - 15891871
Alignment:
Q  113 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 211  Q
    |||||||||||||||| |||||| |||||  |||||||||||||| |||||  |||| ||| ||||||| | ||||||||  |||||||| ||||||||     
T  15891761 caaagttgatttgatagaaatgacatatctgaaacaaactcgaaacttaaaggatctatctaaaaccttagaaacttaaaggacctatctgaaacaaact 15891860  T
Q  212 tgaaacttaaa 222  Q
    | |||||||||    
T  15891861 tcaaacttaaa 15891871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 222
Target Start/End: Complemental strand, 29457221 - 29457135
Alignment:
Q  137 atatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    |||||| |||||||||||||| ||||| || || ||||||| ||| ||| ||||||| |||||||| ||||||||||||||||||||    
T  29457221 atatccgaaacaaactcgaaacttaaagaacctatctgaaatcttagaaacttaaaagacctatctgaaacaaacatgaaacttaaa 29457135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 6121609 - 6121524
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    ||||| |||||||||||||| ||||| || || ||||||||||| ||| ||||||  | |||||||||||||||||||||||||||    
T  6121609 tatccgaaacaaactcgaaacttaaagaacctatctgaaaccttagaaacttaaaggatctatctaaaacaaacatgaaacttaaa 6121524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 9117604 - 9117518
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaaa 223  Q
    |||||||||||||||||||| |||||  | || ||||||||||| ||| ||||||  | |||||| |||||||||||||||||||||    
T  9117604 tatccaaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaaggatctatctgaaacaaacatgaaacttaaaa 9117518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 15315286 - 15315176
Alignment:
Q  113 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 211  Q
    |||||||||||||||| ||||||  ||||| ||| |||||||||| |||||  | || ||||||||||| | ||||||||  |||||||  |||||||||    
T  15315286 caaagttgatttgatagaaatgacctatccgaaataaactcgaaacttaaatgacctatctgaaaccttagaaacttaaaggacctatccgaaacaaaca 15315187  T
Q  212 tgaaacttaaa 222  Q
     ||||||||||    
T  15315186 cgaaacttaaa 15315176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 15495655 - 15495545
Alignment:
Q  113 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 211  Q
    |||||||||||||||| ||||||  ||||| ||| |||||||||| |||||  | || ||||||||||| | ||||||||  |||||||  |||||||||    
T  15495655 caaagttgatttgatagaaatgacctatccgaaataaactcgaaacttaaatgacctatctgaaaccttagaaacttaaaggacctatccgaaacaaaca 15495556  T
Q  212 tgaaacttaaa 222  Q
     ||||||||||    
T  15495555 cgaaacttaaa 15495545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 222
Target Start/End: Complemental strand, 31826936 - 31826850
Alignment:
Q  137 atatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    |||||| |||||||||||||| |||||  | || ||||||||||| ||| ||||||  |||||||||||| |||| |||||||||||    
T  31826936 atatccgaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaaggacctatctaaaataaacgtgaaacttaaa 31826850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 42692023 - 42691913
Alignment:
Q  113 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 211  Q
    |||||||||||||||| ||||||  |||| ||||||||||||||| |||||  | || ||| ||||||| | ||||||||  | |||| ||||||| ||     
T  42692023 caaagttgatttgatagaaatgacctatctaaaacaaactcgaaacttaaaggacctatctaaaaccttagaaacttaaaggatctatttaaaacagacg 42691924  T
Q  212 tgaaacttaaa 222  Q
    |||||||||||    
T  42691923 tgaaacttaaa 42691913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 23404083 - 23404168
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    ||||| |||||||||||||||||||| ||  | ||||||||||| | ||||||||  | |||||| | ||||||||||||||||||    
T  23404083 tatccgaaacaaactcgaaatttaaagaacatatctgaaaccttagtaacttaaaggatctatctgagacaaacatgaaacttaaa 23404168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 15891748 - 15891648
Alignment:
Q  123 ttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaa 221  Q
    |||||| |||||| |||||  |||||||||||||| |||||  |||| ||| ||||||| | ||||||||  |||||||| |||||||| | ||||||||    
T  15891748 ttgataaaaatgacatatctgaaacaaactcgaaacttaaaggatctatctaaaaccttagaaacttaaaggacctatctgaaacaaacttcaaacttaa 15891649  T
Q  222 a 222  Q
    |    
T  15891648 a 15891648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 181
Target Start/End: Complemental strand, 27702513 - 27702445
Alignment:
Q  113 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt 181  Q
    |||||||||||||||| |||||| |||||  |||||||||||||| |||||  | || |||||||||||    
T  27702513 caaagttgatttgatagaaatgacatatcttaaacaaactcgaaacttaaaggacctatctgaaacctt 27702445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 27702602 - 27702686
Alignment:
Q  139 atccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    |||| |||||||||||||| |||||  | || ||||||||||| ||| ||||||  | |||||| ||||||||||||||||||||    
T  27702602 atccgaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaaggagctatctgaaacaaacatgaaacttaaa 27702686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 29218533 - 29218481
Alignment:
Q  111 gtcaaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaa 163  Q
    |||||||||||||||||| ||||||| ||||  |||||||||||||| |||||    
T  29218533 gtcaaagttgatttgataaaaatgatctatctgaaacaaactcgaaacttaaa 29218481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 31827161 - 31827240
Alignment:
Q  144 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    |||||||||| ||| |||||  | || ||||||||||| ||| ||||||| | |||||| ||||||||||||||||||||    
T  31827161 aaacaaactcaaaacttaaaggacctatctgaaaccttagaaacttaaaaaatctatctgaaacaaacatgaaacttaaa 31827240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 222
Target Start/End: Original strand, 23275339 - 23275449
Alignment:
Q  113 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 211  Q
    |||||||||||| ||| ||||||  ||||  |||||||||||||| |||||  | || ||||||||||| | ||||||||  |||||||  ||||||||     
T  23275339 caaagttgatttaatagaaatgacctatctgaaacaaactcgaaacttaaatgacctatctgaaaccttagaaacttaaaggacctatccgaaacaaact 23275438  T
Q  212 tgaaacttaaa 222  Q
     ||||||||||    
T  23275439 cgaaacttaaa 23275449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 23403936 - 23403826
Alignment:
Q  113 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 211  Q
    |||||||||||||||| ||| ||  ||||  |||||||||||||| |||||  | || ||||||||||| | ||||||||  |||||||  ||||||||     
T  23403936 caaagttgatttgatagaaaggacctatctgaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaaggacctatccgaaacaaact 23403837  T
Q  212 tgaaacttaaa 222  Q
     ||||||||||    
T  23403836 cgaaacttaaa 23403826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 35435498 - 35435388
Alignment:
Q  113 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 211  Q
    |||||||||||||||| ||| ||  ||||  |||||||||||||| |||||  | || ||||||||||| | ||||||||| | |||||| |||||||      
T  35435498 caaagttgatttgatagaaaggacttatctgaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaaagatctatctgaaacaaatt 35435399  T
Q  212 tgaaacttaaa 222  Q
     ||||||||||    
T  35435398 cgaaacttaaa 35435388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 222
Target Start/End: Original strand, 35435584 - 35435670
Alignment:
Q  137 atatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    |||||| |||||||||||||| |||||  | || ||| ||||||| ||| ||||||  | |||||| ||||||||||||||||||||    
T  35435584 atatccgaaacaaactcgaaacttaaaggacctatctaaaaccttagaaacttaaaggatctatctgaaacaaacatgaaacttaaa 35435670  T

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Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 222
Target Start/End: Original strand, 7080 - 7237
Alignment:
Q  71 tttcgagtttattttagataagtcactcctatcaacatccgt-----caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaa 165  Q
    |||||||||| ||| ||||| |||| | |||||||| |||||     ||||||||||||| || ||| ||  ||||  |||||||||||||| |||||      
T  7080 tttcgagtttgtttcagataggtcatttctatcaacctccgttaagccaaagttgatttggtagaaaggacctatctgaaacaaactcgaaacttaaagg 7179  T
Q  166 atctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    | || ||||||||||| | ||||||||  || |||| |||||||||  ||||||||||    
T  7180 acctatctgaaaccttagaaacttaaaggacatatccaaaacaaactcgaaacttaaa 7237  T

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Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 22444706 - 22444621
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    ||||| |||||||||||||| ||||| || || |||||||| || | ||||||||  |||||||  |||||||| |||||||||||    
T  22444706 tatccgaaacaaactcgaaacttaaagaacctatctgaaactttagaaacttaaaggacctatccgaaacaaacgtgaaacttaaa 22444621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 44728211 - 44728126
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    ||||| ||| ||||| |||| |||||  | |||||||||||||| ||| ||||||  | |||||| ||||||||||||||||||||    
T  44728211 tatccgaaataaacttgaaacttaaaggacctgtctgaaaccttagaaacttaaaggatctatctgaaacaaacatgaaacttaaa 44728126  T

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Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 44728390 - 44728475
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt-cgaacttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    ||||| |||||||||||||| ||||| ||||| |||||||||||   ||||||||  || | ||| |||||||| |||||||||||    
T  44728390 tatccgaaacaaactcgaaacttaaagaatctatctgaaaccttaaaaacttaaaggacttgtctgaaacaaacgtgaaacttaaa 44728475  T

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Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 15315201 - 15315117
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaacttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    ||||| |||||||| ||||| |||||  |  | ||||||||||| ||| |||||  |||||||| |||||||| |||||||||||    
T  15315201 tatccgaaacaaacacgaaacttaaaggacttatctgaaaccttagaatttaaaggacctatctgaaacaaacgtgaaacttaaa 15315117  T

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Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 15495570 - 15495486
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaacttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    ||||| |||||||| ||||| |||||  |  | ||||||||||| ||| |||||  |||||||| |||||||| |||||||||||    
T  15495570 tatccgaaacaaacacgaaacttaaaggacttatctgaaaccttagaatttaaaggacctatctgaaacaaacgtgaaacttaaa 15495486  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 4965046 - 4965146
Alignment:
Q  123 ttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaa 221  Q
    |||||| ||||||| ||||  |||||||||| |||||||||| | || ||||||||||| | ||||||||  | ||||||||||||||||||||||||||    
T  4965046 ttgatagaaatgatctatctgaaacaaactcaaaatttaaaagacctatctgaaaccttagaaacttaaatgatctatctaaaacaaacatgaaacttaa 4965145  T
Q  222 a 222  Q
    |    
T  4965146 a 4965146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 5739476 - 5739578
Alignment:
Q  122 tttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaactta 220  Q
    ||||||| ||||||| ||||  |||||||||||||| ||||| || || ||||||||||| | ||||||||| | |||||| |||||||| |||||||||    
T  5739476 tttgatagaaatgatctatctgaaacaaactcgaaacttaaagaacctatctgaaaccttagaaacttaaaagatctatctgaaacaaacgtgaaactta 5739575  T
Q  221 aaa 223  Q
    |||    
T  5739576 aaa 5739578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 29987306 - 29987221
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt-cgaacttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    ||||| |||||||||||||| ||||| ||||| |||||||||||   ||||||||  |||||||| |||||||| |||||||||||    
T  29987306 tatccgaaacaaactcgaaacttaaagaatctatctgaaaccttaaaaacttaaaggacctatctgaaacaaacgtgaaacttaaa 29987221  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 1102697 - 1102618
Alignment:
Q  144 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaacttaaaac-acctatctaaaacaaacatgaaacttaaa 222  Q
    |||||||||||||| ||||| ||  ||||||||||||| ||| || |||  ||||||||||||||||||||||| |||||    
T  1102697 aaacaaactcgaaacttaaagaacatgtctgaaaccttagaaatttaaaggacctatctaaaacaaacatgaaatttaaa 1102618  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 223
Target Start/End: Original strand, 15615382 - 15615493
Alignment:
Q  113 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 211  Q
    |||||||||||||||| ||||||  ||||  |||||||||||||| |||||  |  | ||||||||||| | ||||||||  |||||||| ||||||||     
T  15615382 caaagttgatttgatagaaatgacttatctgaaacaaactcgaaacttaaaggacatatctgaaaccttagaaacttaaaggacctatctgaaacaaact 15615481  T
Q  212 tgaaacttaaaa 223  Q
     |||||||||||    
T  15615482 cgaaacttaaaa 15615493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 223
Target Start/End: Complemental strand, 32712288 - 32712181
Alignment:
Q  117 gttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaa 215  Q
    |||||||| ||| ||| ||||||||| |||||||||||||| |||||  |  | ||||||| ||| | ||||||||  | |||||| |||||||||||||    
T  32712288 gttgatttaatagaaaagatatatccgaaacaaactcgaaacttaaaggacttatctgaaatcttagaaacttaaaggatctatctgaaacaaacatgaa 32712189  T
Q  216 acttaaaa 223  Q
    ||||||||    
T  32712188 acttaaaa 32712181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 222
Target Start/End: Complemental strand, 1102835 - 1102678
Alignment:
Q  71 tttcgagtttattttagataagtcactcctatcaacatccgt-----caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaa 165  Q
    |||||||||| ||||||||| |||| | |||||||| |||||     |||||||||||||||| ||||||  ||||  ||| |||||||||| |||||      
T  1102835 tttcgagtttgttttagataggtcatttctatcaacctccgttaagtcaaagttgatttgatagaaatgacttatctgaaataaactcgaaacttaaagg 1102736  T
Q  166 atctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    | || ||||||| ||| | ||||||||   ||||||| ||||||||  ||||||||||    
T  1102735 acctatctgaaatcttagaaacttaaagggcctatctgaaacaaactcgaaacttaaa 1102678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 20491805 - 20491720
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    ||||| |||||||||||||| |||||  | || |||||||||||  || ||||||| | ||||| |||||||||||||||||||||    
T  20491805 tatccgaaacaaactcgaaacttaaaggacctatctgaaaccttaaaaacttaaaagatctatccaaaacaaacatgaaacttaaa 20491720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 39834093 - 39834008
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    |||||||||||||||||||| |||||  |  | ||||||||||| ||| ||||||  |||||||| |||||||| |||||||||||    
T  39834093 tatccaaaacaaactcgaaacttaaaggacttatctgaaaccttagaaacttaaaggacctatctgaaacaaacgtgaaacttaaa 39834008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 241
Target Start/End: Complemental strand, 18088197 - 18088066
Alignment:
Q  113 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 211  Q
    |||||||||||||||| ||||||  ||||  |||||||||||||| |||||  | || ||||||||||| | ||||||||  | |||||| ||||||||     
T  18088197 caaagttgatttgatagaaatgacctatctgaaacaaactcgaaacttaaagtacctatctgaaaccttagaaacttaaaggatctatctgaaacaaact 18088098  T
Q  212 tgaaacttaaa--atctatccaaaacaaactc 241  Q
      |||||||||  |||||||  ||||||||||    
T  18088097 caaaacttaaaggatctatctgaaacaaactc 18088066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 20492020 - 20492099
Alignment:
Q  144 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    |||||||||||||| |||||  | || ||||||||||| ||| ||||||  | |||||| ||||||||||||||||||||    
T  20492020 aaacaaactcgaaacttaaatgacctatctgaaaccttagaaacttaaaggatctatctgaaacaaacatgaaacttaaa 20492099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 41810951 - 41811026
Alignment:
Q  147 caaactcgaaatttaaaaaatctgtctgaaaccttcgaacttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    |||||||||||||||||  | || ||||||||||| |||  | ||| | |||||| ||||||||||||||||||||    
T  41810951 caaactcgaaatttaaaggacctatctgaaaccttagaaacttaaagatctatctgaaacaaacatgaaacttaaa 41811026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 222
Target Start/End: Original strand, 4765016 - 4765126
Alignment:
Q  113 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 211  Q
    |||||||||||||||| ||| ||| ||||  |||||||||||||| ||||| || || ||||||| ||| | ||||||||  || ||||  ||||||||     
T  4765016 caaagttgatttgataaaaaggatttatctgaaacaaactcgaaacttaaagaacctatctgaaatcttagaaacttaaaggacatatccgaaacaaact 4765115  T
Q  212 tgaaacttaaa 222  Q
     ||||||||||    
T  4765116 cgaaacttaaa 4765126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 222
Target Start/End: Original strand, 4765100 - 4765186
Alignment:
Q  137 atatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    |||||| |||||||||||||| ||||| || || | | ||||||| ||| ||||||  |||||||| |||||||| |||||||||||    
T  4765100 atatccgaaacaaactcgaaacttaaagaacctatttaaaaccttagaaacttaaagaacctatctgaaacaaacgtgaaacttaaa 4765186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 41810839 - 41810745
Alignment:
Q  129 taaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    ||||||| |||||| |||||||||  ||| |||||  | || ||||||||||| ||| ||||||  |||||||| |||||||| |||||||||||    
T  41810839 taaatgacatatccgaaacaaacttaaaacttaaaggacctatctgaaaccttagaaacttaaataacctatctgaaacaaacgtgaaacttaaa 41810745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 45721241 - 45721147
Alignment:
Q  129 taaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    |||||||| ||||| |||||| ||||||| |||||  |  | ||||||||||| ||| ||||||| | ||| || ||||||||||||||||||||    
T  45721241 taaatgatctatccgaaacaagctcgaaacttaaaggacatatctgaaaccttagaaacttaaaagatctacctgaaacaaacatgaaacttaaa 45721147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 222
Target Start/End: Original strand, 49113167 - 49113261
Alignment:
Q  129 taaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    |||| ||| ||||| |||||||||||||| |||||  |  ||||||||||||| | ||||||||  | |||||| ||| ||||||||||||||||    
T  49113167 taaaggatctatccgaaacaaactcgaaacttaaaggacatgtctgaaaccttagaaacttaaaggatctatctgaaataaacatgaaacttaaa 49113261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 4975013 - 4975066
Alignment:
Q  111 gtcaaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaa 164  Q
    |||||||||||||||||| |||||| |||||  ||||||||| |||| ||||||    
T  4975013 gtcaaagttgatttgatagaaatgacatatctgaaacaaacttgaaacttaaaa 4975066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 221
Target Start/End: Original strand, 18030544 - 18030628
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaa 221  Q
    |||||||||||||||||||| ||||| ||| | ||||||||||| | || |||||  || ||||| ||||||| |||||| ||||    
T  18030544 tatccaaaacaaactcgaaacttaaataatatatctgaaaccttagaaatttaaaggacttatctgaaacaaatatgaaatttaa 18030628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 181
Target Start/End: Complemental strand, 29987391 - 29987323
Alignment:
Q  113 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt 181  Q
    |||||||||||||||| ||||||  ||||  |||||||||||||| |||||  | || |||||||||||    
T  29987391 caaagttgatttgatagaaatgacctatctgaaacaaactcgaaacttaaaggacctatctgaaacctt 29987323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 222
Target Start/End: Original strand, 45443365 - 45443475
Alignment:
Q  113 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacct-tcgaacttaaaacacctatctaaaacaaaca 211  Q
    |||||||||||||||| ||||||  |||| ||||||||||||||| |||||  | || ||||||||||    ||||||||  |||||||||||||||||     
T  45443365 caaagttgatttgatagaaatgacctatctaaaacaaactcgaaacttaaaggacctatctgaaacctcaaaaacttaaaggacctatctaaaacaaacg 45443464  T
Q  212 tgaaacttaaa 222  Q
    |||||||||||    
T  45443465 tgaaacttaaa 45443475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 48840119 - 48840026
Alignment:
Q  129 taaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaacttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    |||| ||| ||||| |||||||||| ||||||||| || || ||||||||||| ||| |||||  |||||||| |||||||| |||||||||||    
T  48840119 taaaggatctatccgaaacaaactcaaaatttaaagaacctatctgaaaccttagaatttaaaggacctatctgaaacaaacgtgaaacttaaa 48840026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 113 - 222
Target Start/End: Original strand, 44941188 - 44941298
Alignment:
Q  113 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 211  Q
    |||||||||||||||| ||||||||||||  |||||||||||||| |||||  |  | ||||||| ||| | ||||||||  ||||||| |||||||||     
T  44941188 caaagttgatttgatagaaatgatatatctgaaacaaactcgaaacttaaaggacttatctgaaatcttagaaacttaaaggacctatccaaaacaaact 44941287  T
Q  212 tgaaacttaaa 222  Q
     ||||||||||    
T  44941288 cgaaacttaaa 44941298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 223
Target Start/End: Original strand, 18808102 - 18808203
Alignment:
Q  123 ttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaa 221  Q
    |||||| ||||||  ||||  ||||||||||||||||||||  |||| ||| ||||||| ||| | ||||  ||||||||||||||||| ||||||||||    
T  18808102 ttgatagaaatgacctatctgaaacaaactcgaaatttaaaggatctatctaaaaccttagaaacataaaggacctatctaaaacaaacgtgaaacttaa 18808201  T
Q  222 aa 223  Q
    ||    
T  18808202 aa 18808203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 37043073 - 37042994
Alignment:
Q  144 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    |||||||||||||| |||||  |||| ||||||||||| ||| |||||| || |||||  ||||||||||||||||||||    
T  37043073 aaacaaactcgaaacttaaaggatctatctgaaaccttagaaacttaaagcatctatcctaaacaaacatgaaacttaaa 37042994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 8919677 - 8919567
Alignment:
Q  113 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt-cgaacttaaaacacctatctaaaacaaaca 211  Q
    |||||||||||||||| ||||||  ||||  |||||||||| ||| |||||  | || |||||||||||   ||||||||| |||||||  ||||||||     
T  8919677 caaagttgatttgatagaaatgacctatctgaaacaaactcaaaacttaaaggacctatctgaaaccttaaaaacttaaaagacctatccgaaacaaact 8919578  T
Q  212 tgaaacttaaa 222  Q
    |||||||||||    
T  8919577 tgaaacttaaa 8919567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 18942398 - 18942313
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    ||||| ||||||||||||||||||||  | || ||||||||||  ||| ||||||  | |||||| ||||||||||||||||||||    
T  18942398 tatccgaaacaaactcgaaatttaaaggacctatctgaaacctcagaaacttaaaggatctatctgaaacaaacatgaaacttaaa 18942313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 42430633 - 42430718
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    ||||| |||||||||||||| |||||  | || ||||||||||| ||| ||||||  | |||||| ||||||||||||||||||||    
T  42430633 tatccgaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaaggatctatctgaaacaaacatgaaacttaaa 42430718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 42759217 - 42759302
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    ||||| |||||||||||||| ||||| || || ||||||||||| | ||||||||| |||||| | ||| |||| |||||||||||    
T  42759217 tatccgaaacaaactcgaaacttaaagaacctatctgaaaccttagaaacttaaaagacctatatgaaataaacgtgaaacttaaa 42759302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 45203758 - 45203826
Alignment:
Q  113 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt 181  Q
    |||||||||||||||| |||||| |||||  |||||||||||||| |||||  | || |||||||||||    
T  45203758 caaagttgatttgatagaaatgacatatctgaaacaaactcgaaacttaaaggacctatctgaaacctt 45203826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 29036317 - 29036384
Alignment:
Q  114 aaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt 181  Q
    ||||||||||||||| ||||||   |||| |||||||||||||| ||||| || || |||||||||||    
T  29036317 aaagttgatttgatagaaatgaccaatccgaaacaaactcgaaacttaaagaacctatctgaaacctt 29036384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 222
Target Start/End: Original strand, 22563895 - 22564005
Alignment:
Q  113 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 211  Q
    |||||||||||||||| ||| || |||||  |||||||||||||| |||||  | || ||||||| ||| | ||||||||  |||||||  ||||||||     
T  22563895 caaagttgatttgatagaaaggacatatcggaaacaaactcgaaacttaaaggacctatctgaaatcttagaaacttaaaggacctatccgaaacaaact 22563994  T
Q  212 tgaaacttaaa 222  Q
     ||||||||||    
T  22563995 cgaaacttaaa 22564005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 163
Target Start/End: Original strand, 22642031 - 22642081
Alignment:
Q  113 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaa 163  Q
    |||||||||||||||| |||||| |||||  |||||||||||||| |||||    
T  22642031 caaagttgatttgatagaaatgacatatctgaaacaaactcgaaacttaaa 22642081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 3173325 - 3173240
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    ||||| |||||||||||||| |||||  | || |||||||||||  || ||||||  | |||||| ||||||||||||||||||||    
T  3173325 tatccgaaacaaactcgaaacttaaaggacctatctgaaaccttaaaaacttaaaggatctatctgaaacaaacatgaaacttaaa 3173240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 47193512 - 47193597
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    ||||| ||| |||||||||| |||||  | || ||| ||||||| ||| ||||||| | |||||||||||| ||||||||||||||    
T  47193512 tatccgaaataaactcgaaacttaaaggacctatctaaaaccttagaaacttaaaagatctatctaaaacatacatgaaacttaaa 47193597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 48840252 - 48840337
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    ||||| |||||||||||||| |||||  | || | ||||||||| ||| ||||||  | |||||| ||||||||||||||||||||    
T  48840252 tatccgaaacaaactcgaaacttaaaggacctatttgaaaccttagaaacttaaaggatctatctgaaacaaacatgaaacttaaa 48840337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 47332405 - 47332353
Alignment:
Q  171 tctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    ||||||||||| ||| ||||||  | |||||||||||||||||||||||||||    
T  47332405 tctgaaaccttagaaacttaaatgatctatctaaaacaaacatgaaacttaaa 47332353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 10820408 - 10820298
Alignment:
Q  113 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 211  Q
    |||||||||||||||| ||||||  ||||  |||||||||||||| ||||| || || ||||||||||| | ||||||||| |||||||  ||||||||     
T  10820408 caaagttgatttgatagaaatgacctatctgaaacaaactcgaaacttaaagaacctatctgaaaccttagaaacttaaaagacctatccgaaacaaact 10820309  T
Q  212 tgaaacttaaa 222  Q
     ||||||||||    
T  10820308 cgaaacttaaa 10820298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 137 - 222
Target Start/End: Original strand, 33623357 - 33623443
Alignment:
Q  137 atatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    |||||| |||||||||||||| |||||  |||| ||||||||||| | ||||||||  |||||||||||||| || |||||||||||    
T  33623357 atatccgaaacaaactcgaaacttaaaggatctatctgaaaccttagaaacttaaaggacctatctaaaacagacgtgaaacttaaa 33623443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 13712307 - 13712392
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    ||||| |||||||||||||| ||||| || || ||||||||||| | ||||||||  |||||||| |||||||| |||||||||||    
T  13712307 tatccgaaacaaactcgaaacttaaagaacctatctgaaaccttagaaacttaaaggacctatctgaaacaaacgtgaaacttaaa 13712392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 17579847 - 17579762
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    ||||| |||||||||||||| |||||  | || ||||||||||| ||| ||||||  |||||||| ||||||||||||||||||||    
T  17579847 tatccgaaacaaactcgaaacttaaagcacctatctgaaaccttagaaacttaaagaacctatctgaaacaaacatgaaacttaaa 17579762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 164
Target Start/End: Complemental strand, 29231023 - 29230972
Alignment:
Q  113 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaa 164  Q
    |||||||||||||||| |||||| |||||  |||||||||||||||||||||    
T  29231023 caaagttgatttgatagaaatgacatatctgaaacaaactcgaaatttaaaa 29230972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 11871582 - 11871472
Alignment:
Q  113 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 211  Q
    ||||||||| |||||| ||||||  |||| ||||||||||||||| |||||| | || ||||||||||| | ||||||||  ||||||   ||||||||     
T  11871582 caaagttgacttgatagaaatgacctatctaaaacaaactcgaaacttaaaagacctatctgaaaccttagaaacttaaaggacctatacgaaacaaact 11871483  T
Q  212 tgaaacttaaa 222  Q
     ||||||||||    
T  11871482 cgaaacttaaa 11871472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 163
Target Start/End: Complemental strand, 11218292 - 11218195
Alignment:
Q  71 tttcgagtttattttagataagtcactcctatcaacatccgt-----caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaa 163  Q
    |||||||||||||| ||||| |||| | ||||||||||||||     |||||||||||||||| ||| ||  ||||  |||||||||||||| |||||    
T  11218292 tttcgagtttatttcagataggtcatttctatcaacatccgttaagccaaagttgatttgatagaaaggacctatctgaaacaaactcgaaacttaaa 11218195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 11218258 - 11218358
Alignment:
Q  123 ttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaa 221  Q
    |||||| ||||||  ||||  ||| ||||||||||||||||  |||| ||||||||||| | ||||||||  || ||||| |||||||| ||||||||||    
T  11218258 ttgatagaaatgacctatctgaaataaactcgaaatttaaaggatctatctgaaaccttagaaacttaaaggacttatctgaaacaaacttgaaacttaa 11218357  T
Q  222 a 222  Q
    |    
T  11218358 a 11218358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 165
Target Start/End: Complemental strand, 23232366 - 23232315
Alignment:
Q  114 aaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaa 165  Q
    ||||||||||||||| ||| || |||||| |||||||||||||| |||||||    
T  23232366 aaagttgatttgatagaaaagacatatccgaaacaaactcgaaacttaaaaa 23232315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 138 - 220
Target Start/End: Complemental strand, 48518014 - 48517931
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaactta 220  Q
    ||||| |||||||||||||| |||||  | || ||| ||||||| ||| ||||||  | |||||||||||||||||||||||||    
T  48518014 tatccgaaacaaactcgaaacttaaaggacctatctaaaaccttagaaacttaaaggatctatctaaaacaaacatgaaactta 48517931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 181
Target Start/End: Complemental strand, 47220416 - 47220346
Alignment:
Q  111 gtcaaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt 181  Q
    |||||||||||||||||| ||||||| |||   |||||||||||||| |||||| | || ||| |||||||    
T  47220416 gtcaaagttgatttgatagaaatgatctatgtgaaacaaactcgaaacttaaaagacctatctaaaacctt 47220346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 10820323 - 10820238
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    ||||| |||||||||||||| ||||| ||  | ||||||||||| | ||||||||  | |||||| |||||||| |||||||||||    
T  10820323 tatccgaaacaaactcgaaacttaaagaacatatctgaaaccttagaaacttaaaggatctatctgaaacaaacgtgaaacttaaa 10820238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 17580068 - 17580153
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    ||||| ||| |||||||||| ||||||||  | ||| ||||||| ||| ||||||| | ||||||||||||||||| ||| |||||    
T  17580068 tatccgaaataaactcgaaacttaaaaaacttatctaaaaccttagaaacttaaaaaatctatctaaaacaaacataaaatttaaa 17580153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 221
Target Start/End: Original strand, 8112812 - 8112896
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaacttaaaac-acctatctaaaacaaacatgaaacttaa 221  Q
    |||||||||||||||||||| || ||  |  | ||||||||||| ||| || |||  ||||||||||||||||| ||||||||||    
T  8112812 tatccaaaacaaactcgaaactttaaggacttatctgaaaccttagaaatttaaaggacctatctaaaacaaacgtgaaacttaa 8112896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 54924091 - 54924168
Alignment:
Q  144 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    |||||||||||||| ||||| || || ||||||||||| | ||||||||  |  |||||||||||||||| |||||||||    
T  54924091 aaacaaactcgaaacttaaagaacctatctgaaaccttagaaacttaaa--aggtatctaaaacaaacataaaacttaaa 54924168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 50523171 - 50523077
Alignment:
Q  129 taaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    |||| ||| ||||| |||||||||||||| ||||| ||||| || |||||| | ||| ||||||  ||||||||||||||||| |||||||||||    
T  50523171 taaaggatctatccgaaacaaactcgaaacttaaagaatctatccgaaaccatagaaacttaaatgacctatctaaaacaaacgtgaaacttaaa 50523077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 218
Target Start/End: Complemental strand, 18598293 - 18598212
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaact 218  Q
    ||||| ||||||||||||||||||||  |||| ||||||||||| | ||||||||  |||||||| |||||||| |||||||    
T  18598293 tatccgaaacaaactcgaaatttaaatgatctatctgaaaccttagaaacttaaaggacctatctgaaacaaacttgaaact 18598212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 21956120 - 21956040
Alignment:
Q  143 aaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    |||||||||||||||||||||  | || ||||||||||| ||| ||||||  | |||||| ||||||||||||||||||||    
T  21956120 aaaacaaactcgaaatttaaaggacctatctgaaaccttagaaacttaaaggatctatctgaaacaaacatgaaacttaaa 21956040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 40998284 - 40998185
Alignment:
Q  123 ttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaacttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    |||||| ||| || |||||  |||||||||||||| |||||  | || ||||||||||| |||||||||  |||||||| ||||||||  ||||||||||    
T  40998284 ttgatagaaaggacatatctgaaacaaactcgaaacttaaaggacctatctgaaaccttagaacttaaaggacctatctgaaacaaactcgaaacttaaa 40998185  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 222
Target Start/End: Original strand, 40998429 - 40998515
Alignment:
Q  137 atatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt-cgaacttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    |||||| |||||||||||||| ||||| || || |||||||||||   ||||||||  || |||||||||||||| |||||||||||    
T  40998429 atatccgaaacaaactcgaaacttaaagaacctatctgaaaccttataaacttaaagaacatatctaaaacaaacgtgaaacttaaa 40998515  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 18598537 - 18598622
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    ||||| |||||||||||||| |||||  | || ||||||||||| ||| |||| |  ||||||||||||||||| |||||||||||    
T  18598537 tatccgaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttagaggacctatctaaaacaaacttgaaacttaaa 18598622  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 25154799 - 25154884
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    ||||| |||||||||| ||  |||||  | |||||||||||||| ||| ||||||| | |||||| ||||||||||||||||||||    
T  25154799 tatccgaaacaaactctaatcttaaaggacctgtctgaaaccttagaaacttaaaagatctatctgaaacaaacatgaaacttaaa 25154884  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 29031367 - 29031282
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    ||||| |||||||||||||| |||||  | || ||||||| ||| ||| ||||||| || |||||||||||||| |||||||||||    
T  29031367 tatccgaaacaaactcgaaacttaaaggacctatctgaaatcttagaaacttaaaagacttatctaaaacaaacgtgaaacttaaa 29031282  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 29043486 - 29043401
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    ||||| |||||||||||||| |||||  | || ||||||| ||| ||| ||||||| || |||||||||||||| |||||||||||    
T  29043486 tatccgaaacaaactcgaaacttaaaggacctatctgaaatcttagaaacttaaaagacttatctaaaacaaacgtgaaacttaaa 29043401  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 13846713 - 13846613
Alignment:
Q  123 ttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaa 221  Q
    |||||||||| ||  ||||  |||||||||||||| |||||| | || ||||||||||| | ||||||||  | |||||| ||||||||||||| |||||    
T  13846713 ttgatataaaggacctatctgaaacaaactcgaaacttaaaagacctatctgaaaccttagaaacttaaaggatctatctgaaacaaacatgaaccttaa 13846614  T
Q  222 a 222  Q
    |    
T  13846613 a 13846613  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 34979576 - 34979497
Alignment:
Q  144 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    |||||||||||||| |||||  | || ||||||||||| ||| ||||||  |||||||| |||||||| |||||||||||    
T  34979576 aaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaaggacctatctgaaacaaacgtgaaacttaaa 34979497  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 40998204 - 40998125
Alignment:
Q  144 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    |||||||||||||| |||||  | || |||||||| || | ||||||||| | ||||||||||||||||||||| |||||    
T  40998204 aaacaaactcgaaacttaaaggacctatctgaaactttagtaacttaaaagatctatctaaaacaaacatgaaatttaaa 40998125  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 223
Target Start/End: Complemental strand, 41898305 - 41898194
Alignment:
Q  113 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 211  Q
    ||||||| |||||||||||| ||  ||||  |||||||||||||| |||||  |||| ||||||||||| | ||||||||  | |||||  ||||||||     
T  41898305 caaagtttatttgatataaaagacctatctgaaacaaactcgaaacttaaaggatctatctgaaaccttagaaacttaaaggatctatccgaaacaaact 41898206  T
Q  212 tgaaacttaaaa 223  Q
     |||||||||||    
T  41898205 cgaaacttaaaa 41898194  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 222
Target Start/End: Original strand, 21956368 - 21956454
Alignment:
Q  137 atatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    |||||| |||||||||||||| |||||  | || |||||||||||  || ||||||  |||||||  ||||||||||||||||||||    
T  21956368 atatccgaaacaaactcgaaacttaaaggacctatctgaaaccttaaaaacttaaaggacctatccgaaacaaacatgaaacttaaa 21956454  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 25363566 - 25363647
Alignment:
Q  144 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaa--acacctatctaaaacaaacatgaaacttaaa 222  Q
    |||||||||||||| |||||  |||| ||||||||||| ||| ||||||  | | |||||| ||||||||||||||||||||    
T  25363566 aaacaaactcgaaacttaaaggatctatctgaaaccttagaaacttaaaggagatctatctgaaacaaacatgaaacttaaa 25363647  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 41898229 - 41898136
Alignment:
Q  129 taaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    |||| ||| ||||| |||||||||||||| || ||||| || ||||||||||| | ||||||||  ||| |||| |||||||| |||||||||||    
T  41898229 taaaggatctatccgaaacaaactcgaaactt-aaaaacctatctgaaaccttagaaacttaaaggacccatctgaaacaaacgtgaaacttaaa 41898136  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 14966429 - 14966514
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    ||||| |||||||||||||| ||||| || || ||| ||||||| ||| ||||||  | ||||||||||||||||| ||| |||||    
T  14966429 tatccgaaacaaactcgaaacttaaagaacctatctaaaaccttagaaccttaaacgatctatctaaaacaaacataaaatttaaa 14966514  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 15631425 - 15631340
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    ||||| |||||||||||||| |||||  |||| ||||||||||| | || |||||  |||||||| ||| ||||| ||||||||||    
T  15631425 tatccgaaacaaactcgaaacttaaaggatctatctgaaaccttagaaatttaaaggacctatctgaaataaacaggaaacttaaa 15631340  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 20421276 - 20421227
Alignment:
Q  114 aaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaa 163  Q
    ||||||||||||||| ||||||  ||||  ||||||||||||||||||||    
T  20421276 aaagttgatttgatagaaatgacctatctgaaacaaactcgaaatttaaa 20421227  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 222
Target Start/End: Complemental strand, 25154711 - 25154602
Alignment:
Q  114 aaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacat 212  Q
    ||||||||||||||| ||||||  |||| |||||||||||||||  ||||  | || ||| ||||||| | ||||||||  || ||||| ||||||||      
T  25154711 aaagttgatttgatagaaatgacctatctaaaacaaactcgaaacctaaatgagctatcttaaaccttagaaacttaaaggacatatctgaaacaaactc 25154612  T
Q  213 gaaacttaaa 222  Q
    ||||||||||    
T  25154611 gaaacttaaa 25154602  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 6112013 - 6112093
Alignment:
Q  144 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaaa 223  Q
    |||||||||||||| |||||  | || ||||||||||| | ||||||||| ||||||| |||||||||   ||||||||||    
T  6112013 aaacaaactcgaaacttaaacgacctatctgaaaccttagaaacttaaaagacctatccaaaacaaactccaaacttaaaa 6112093  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 41898318 - 41898418
Alignment:
Q  123 ttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaa 221  Q
    |||||| ||| || ||||| ||||||||||||||| |||||  |  | ||||||||||| | ||||||||  | |||||| |||||||| ||||||||||    
T  41898318 ttgatagaaaggacatatctaaaacaaactcgaaacttaaaggacatatctgaaaccttagaaacttaaatgatctatctgaaacaaacttgaaacttaa 41898417  T
Q  222 a 222  Q
    |    
T  41898418 a 41898418  T

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Target: scaffold0062 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 11818 - 11733
Alignment:
Q  138 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    ||||| |||||||||| ||| |||||  | || ||||||||||||||| ||||||  | |||||| ||||||||||||||||||||    
T  11818 tatccgaaacaaactccaaacttaaaggacctatctgaaaccttcgaaacttaaaggatctatctgaaacaaacatgaaacttaaa 11733  T

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Target: scaffold0182 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 181
Target Start/End: Original strand, 22311 - 22426
Alignment:
Q  71 tttcgagtttattttagataagtcactcctatcaacatccgt-----caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaa 165  Q
    |||||||||| ||| |||||||||| | ||| |||| |||||     |||||||||||||||| ||||||  ||||  ||||||||||| || |||||||    
T  22311 tttcgagtttctttcagataagtcatttctaccaacctccgttaagccaaagttgatttgatagaaatgacctatctgaaacaaactcgtaacttaaaaa 22410  T
Q  166 atctgtctgaaacctt 181  Q
    |  | |||||||||||    
T  22411 acatatctgaaacctt 22426  T

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Target: scaffold0182; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 22449 - 22529
Alignment:
Q  144 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaaa 223  Q
    |||||||||||||| ||||| ||||| |||||||| || | || |||||  |||||||| |||||||| | ||||||||||    
T  22449 aaacaaactcgaaacttaaagaatctatctgaaactttagaaatttaaaggacctatctgaaacaaacgttaaacttaaaa 22529  T

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Target: scaffold0051 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 60570 - 60491
Alignment:
Q  144 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    |||||||||||||| |||||  | || ||||||||||| ||| ||||||  |||||||| |||||||| |||||||||||    
T  60570 aaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaagtacctatctgaaacaaacgtgaaacttaaa 60491  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 24012518 - 24012597
Alignment:
Q  144 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    ||||||||||||||||||||  | || ||||||||||| | ||||||||  | |||||| |||||||| |||||||||||    
T  24012518 aaacaaactcgaaatttaaaggacctatctgaaaccttagaaacttaaaggatctatctgaaacaaacgtgaaacttaaa 24012597  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 33040915 - 33040982
Alignment:
Q  114 aaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt 181  Q
    ||||||||||| ||| ||||||| ||||  |||||||||||||| |||||| | || |||||||||||    
T  33040915 aaagttgattttatagaaatgatctatctgaaacaaactcgaaacttaaaagaactatctgaaacctt 33040982  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 222
Target Start/End: Original strand, 33040998 - 33041086
Alignment:
Q  135 atatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt-cgaacttaaaacacctatctaaaacaaacatgaaacttaaa 222  Q
    |||||||| |||||||||  ||| |||||  | || ||||||||||| | ||||||||  |||||||| |||||||| |||||||||||    
T  33040998 atatatccgaaacaaacttcaaacttaaaggacctatctgaaaccttacaaacttaaaggacctatctgaaacaaacgtgaaacttaaa 33041086  T

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Target: scaffold0220 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 21975 - 22075
Alignment:
Q  123 ttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaa 221  Q
    |||||| ||| ||| ||||  ||||||||||||||||||||  |||| ||||||||||| | ||||||||  ||||||   ||||||||  |||||||||    
T  21975 ttgatagaaaggatctatctgaaacaaactcgaaatttaaaggatctatctgaaaccttagaaacttaaaggacctatacgaaacaaactcgaaacttaa 22074  T
Q  222 a 222  Q
    |    
T  22075 a 22075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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