View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2800R-Insertion-9 (Length: 201)
Name: NF2800R-Insertion-9
Description: NF2800R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2800R-Insertion-9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 126; Significance: 3e-65; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 3e-65
Query Start/End: Original strand, 9 - 170
Target Start/End: Original strand, 13509552 - 13509713
Alignment:
| Q |
9 |
aaagctaggggtgatggtcttttcaaggctcttgaaggttacgttttggcaaatcctaattactaaagcatatagctaattgcttgcttgctttatacat |
108 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
13509552 |
aaagctaggggtgatggtcttttcaaagctcttgaaggttatgttttggcaaatcctgattactaaagcatatagctaattgcttacttgctttatacat |
13509651 |
T |
|
| Q |
109 |
ggtgtgttgtgatgcattttattgtatcaagtgtgtttgatttggcttccaatgtaattctc |
170 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||||| ||||||||| | |||||||||||||| |
|
|
| T |
13509652 |
ggcgtgttgtaatgcattttattgtatcaagtgtgcttgatttggttgccaatgtaattctc |
13509713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 13485791 - 13485935
Alignment:
| Q |
9 |
aaagctaggggtgatggtcttttcaaggctcttgaaggttacgttttggcaaatcctaattactaaagcatatagctaattgcttgcttgctttatacat |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13485791 |
aaagctaggggtgatggtcttttcaaggctcttgaaggttacgttttggcaaatcctgattactaaagcatatagctaattgcttgcttgctttatacat |
13485890 |
T |
|
| Q |
109 |
ggtgtgttgtgatgcattttattgtatcaagtgtgtttgatttgg |
153 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||| | ||||||||| |
|
|
| T |
13485891 |
ggtgtgttgtgatgcattttattatatcatgtgggcttgatttgg |
13485935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 122; E-Value: 8e-63
Query Start/End: Original strand, 8 - 153
Target Start/End: Original strand, 13492229 - 13492374
Alignment:
| Q |
8 |
aaaagctaggggtgatggtcttttcaaggctcttgaaggttacgttttggcaaatcctaattactaaagcatatagctaattgcttgcttgctttataca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13492229 |
aaaagctaggggtgatggtcttttcaaggctcttgaaggttacgttttggcaaatcctgattactaaagcatatagctaattgcttgcttgctttataca |
13492328 |
T |
|
| Q |
108 |
tggtgtgttgtgatgcattttattgtatcaagtgtgtttgatttgg |
153 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||| | ||||||||| |
|
|
| T |
13492329 |
cggtgtgttgtgatgcattttattatatcatgtgggcttgatttgg |
13492374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 9 - 170
Target Start/End: Original strand, 13515310 - 13515469
Alignment:
| Q |
9 |
aaagctaggggtgatggtcttttcaaggctcttgaaggttacgttttggcaaatcctaattac---taaagcatatagctaattgcttgcttgctttata |
105 |
Q |
| |
|
||||||| |||||||||||||||||||||| | || |||||| |||||| |||||| ||||| |||||||||||| || |||||||| |||| |
|
|
| T |
13515310 |
aaagctaagggtgatggtcttttcaaggctatagagggttactgtttggctaatcctgattacaactaaagcatatag-----tgtgtgcttgctctata |
13515404 |
T |
|
| Q |
106 |
catggtgtgttgtgatgcattttattgtatcaagtgtgtttgatttggcttccaatgtaattctc |
170 |
Q |
| |
|
||| |||||||||| ||||||||| |||| |||||| || |||||| | |||||||||||||| |
|
|
| T |
13515405 |
aatgttgtgttgtgacacattttattatatctagtgtgcttaatttggatgccaatgtaattctc |
13515469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 13501507 - 13501569
Alignment:
| Q |
9 |
aaagctaggggtgatggtcttttcaaggctcttgaaggttacgttttggcaaatcctaattac |
71 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||| |||||| |||||| |||||| ||||| |
|
|
| T |
13501507 |
aaagctaagggtgatggtcttttcaaggcccttgagggttactgtttggctaatcctgattac |
13501569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University