View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2800_high_1 (Length: 255)
Name: NF2800_high_1
Description: NF2800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2800_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 45388578 - 45388334
Alignment:
| Q |
1 |
catatgtagtctaaagatatctcatactgttaaaatatattggactgaccatgttatcatacgcagaaaattgttatattggccattttaattgttcttg |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45388578 |
catatgtagtctaaa-atatctcatactgttaaaatatattggactgaccatgttatcatacgcagaaaattgttatattggccattttaattgttcttg |
45388480 |
T |
|
| Q |
101 |
tgccccttaaaaacgtcatatctttctcggttcataatccctgaatctatcgggtggtaactccaactcgctgttgttcgggtgttatgacatcattcac |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45388479 |
tgccccttaaaaacgtcatatctctctcggttcataatccctgaatctatcgggtggtaactccaactcgctgttgttcgggtgttatgacatcattcac |
45388380 |
T |
|
| Q |
201 |
ctttatcatatatcaaaaaacattacttgtactatatttcttcatc |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45388379 |
ctttatcatatatcaaaaaacattacttgtactatatttcttcatc |
45388334 |
T |
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