View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2800_high_10 (Length: 324)
Name: NF2800_high_10
Description: NF2800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2800_high_10 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 24909381 - 24909073
Alignment:
| Q |
16 |
ggagattttcatccttcaagcaaaattggtggaggaggttatggagttgtctacaaggttaggatcataaccgatgcttttttcatcttttgttttgtct |
115 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
24909381 |
ggagattttcatccttcatgcaaaattggtggaggagggtatggagttgtctacaaggttaggatcataaccaatgcttttttcatcttttgttttgtct |
24909282 |
T |
|
| Q |
116 |
tatttcttagtgcttactacctgaaattaatttgtgtcattgtcattaacatttgtagggtgttttaagggatggtacgcaagtcgctatcaagtctctt |
215 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24909281 |
tatttcttagtgcttactacccgaaattaatttgtgtcattgtcattaacatttgtagggtgttttaagggatggtactcaagtcgctatcaagtctctt |
24909182 |
T |
|
| Q |
216 |
tctgtagagtctaaacaaggaactcacgaatttatgacagaaattgctatgatatctaatatacaacatccaaatcttgtgaaattaatcggcttctgta |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24909181 |
tctgtagagtctaaacaaggaactcacgaatttatgacagaaattgctatgatatctaatatacaacatccaaatcttgtgaaattaatcggcttctgta |
24909082 |
T |
|
| Q |
316 |
tcgagggta |
324 |
Q |
| |
|
||||||||| |
|
|
| T |
24909081 |
tcgagggta |
24909073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 14 - 324
Target Start/End: Complemental strand, 24894740 - 24894428
Alignment:
| Q |
14 |
ctggagattttcatccttcaagcaaaattggtggaggaggttatggagttgtctacaaggttaggatcataaccgatgcttttttca-tcttttgtttt- |
111 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
24894740 |
ctggagattttcatccttcatgcaaaattggcggaggaggctatggagttgtctacaaggttaggatcataaccaatgcttttttttgtcttttgttttt |
24894641 |
T |
|
| Q |
112 |
gtcttatttcttagtgcttactacctgaaattaatttgtgtcattgtcattaacatttgtagggtgttttaagggatggtacgcaagtcgctatcaagtc |
211 |
Q |
| |
|
||| |||| |||||||||||| ||| |||||| |||||| ||| ||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24894640 |
gtcatattgcttagtgcttaccacccgaaattcatttgtttcactgtcattaacatttgcagggagttttaagggatggtactcaagtcgctatcaagtc |
24894541 |
T |
|
| Q |
212 |
tctttctgtagagtctaaacaaggaactcacgaatttatgacagaaattgctatgatatctaatatacaacatccaaatcttgtgaaattaatcggcttc |
311 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
24894540 |
actttctgtagagtcgaaacaaggaactcatgaatttatgacagaaattgctatgatatctaatatacaacatccaaatcttgtgaaactaatcggcttc |
24894441 |
T |
|
| Q |
312 |
tgtatcgagggta |
324 |
Q |
| |
|
||||||||||||| |
|
|
| T |
24894440 |
tgtatcgagggta |
24894428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University