View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2800_high_1_N (Length: 734)
Name: NF2800_high_1_N
Description: NF2800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2800_high_1_N |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 477; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 101 - 589
Target Start/End: Original strand, 1394933 - 1395421
Alignment:
| Q |
101 |
aggatacaataatctaaaatatgatatcgaaacgacatttgatacttagatatttaatatttctgacggaaacatcaacaacttacaattcataacggct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1394933 |
aggatacaataatctaaaatatgatatcgaaacgacatttgatacttagatatttaatatttctgacggaaacatcaataacttacaattcataacggct |
1395032 |
T |
|
| Q |
201 |
acaagtcacaatacttggcttgactagtaaatatagttcaagactttgatattttattcatctcaaaacatactaatttaatatacaagattttggatta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1395033 |
acaagtcacaatacttggcttgactagtaaatatagttcaagactttgatattttattcatctcaaaacatactaatttaatatacaagattttggatta |
1395132 |
T |
|
| Q |
301 |
taaatagttcaagacttataattatgcataacataaacacaattatgcgctcaatgtcacattttgtttgaaacttcacaaaagattaattataatataa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1395133 |
taaatagttcaagacttataattatgcataacataaacacaattatgcgctcaatgtcacattttgtttgaaacttcacaaaagattaattataatataa |
1395232 |
T |
|
| Q |
401 |
acatcagacgatagttcatagtagattactcagccacatccttacctttgtatacatgttcatctaaaaatataaatggggatgagatctacttactcgt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1395233 |
acatcagacgatagttcatagtagattactcagccatatccttacctttgtatacatgttcatctaaaaatataaatggggatgagatctacttagtcgt |
1395332 |
T |
|
| Q |
501 |
ggagtttctactaatttatagttcttatcacttgatcatcagattacaatataatcataattcagactgacaatatcattaaatcaata |
589 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1395333 |
ggagtttctactaatttatagttcttatcacttgatcatcagattacaatataatcataattcagactgacaatatcattaaatcaata |
1395421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 424 - 649
Target Start/End: Original strand, 1406345 - 1406562
Alignment:
| Q |
424 |
gattactcagccacatccttacctttgtatacatgttcatctaaaaatataaatggggatgagatctacttactcgtggagtttctactaatttatagtt |
523 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1406345 |
gattactcagccatatccttacctttgtatacatgttcatctaaaaatataaatggggatgagatctacttactcatggagtttctactaatttatagtt |
1406444 |
T |
|
| Q |
524 |
cttatcacttgatcatcagattacaatataatcataattcagactgacaatatcattaaatcaataaaacttaagatattccataaaactttgcatgata |
623 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1406445 |
cttatcacttgatcatcagattacaatataatcataattcagac--------tcattaaatcaataaaacttaagatattccatacaactttgcatgata |
1406536 |
T |
|
| Q |
624 |
ataatttgtacatacgaaaatgacaa |
649 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
1406537 |
ataatttgtacatacgaaaatgacaa |
1406562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 118 - 275
Target Start/End: Original strand, 1406177 - 1406332
Alignment:
| Q |
118 |
aatatgatatcgaaacgacatttgatacttagatatttaatatttctgacggaaacatcaacaacttacaattcataacggctacaagtcacaatacttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1406177 |
aatatgatatcgaaacgacatttgatacttagatatttaatattactgacggaaacatcaacaacttacaattcataacggctacaagtcacaatacttg |
1406276 |
T |
|
| Q |
218 |
gcttgactagtaaatatagttcaagactttgatattttattcatctcaaaacatacta |
275 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1406277 |
gcttgactagtaa--atagttcaagactttgatattttattcatctcaaaacatacta |
1406332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 1406068 - 1406130
Alignment:
| Q |
1 |
ataatgacgtgcaaatttgttaaacacgcctcgggacaaatttcgctacatatagcaccactg |
63 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1406068 |
ataatgacgtgcaaatttgttaaacacgcctcgggacaaatttcgctacatatagcaccactg |
1406130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 1389153 - 1389202
Alignment:
| Q |
14 |
aatttgttaaacacgcctcgggacaaatttcgctacatatagcaccactg |
63 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1389153 |
aatttgttaaacacgcctcgggacaaatttcgctacatatagcaccactg |
1389202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 3e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 437 - 638
Target Start/End: Complemental strand, 42408993 - 42408793
Alignment:
| Q |
437 |
catccttacctttgtatacatgttcatctaaaaatataaatggggatgagatctactta-ctcgtggagtttctactaatttatagttcttatcacttga |
535 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||| |||||| | |||||||| |||| | ||| || ||||||||||| |||| |||||||||||| | |
|
|
| T |
42408993 |
catccttaccattgaatacatgttcatctaaaaa-ataaattgagatgagatttactaatctcagtgaatttctactaatctatatttcttatcacttaa |
42408895 |
T |
|
| Q |
536 |
tcatcagattacaatataatcataattcagactgacaatatcattaaatcaataaaacttaagatattccataaaactttgcatgataataatttgtaca |
635 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| || |||| ||||||||||||||||||||||||||||| |||| |||||| | |||| |||||| ||||| |
|
|
| T |
42408894 |
tcatcatattacaatataatcatatttcaggctaacaagatcattaaatcaataaaacttaagatatt-catacaactttacttgatgataattcgtaca |
42408796 |
T |
|
| Q |
636 |
tac |
638 |
Q |
| |
|
||| |
|
|
| T |
42408795 |
tac |
42408793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 104 - 317
Target Start/End: Complemental strand, 42409350 - 42409130
Alignment:
| Q |
104 |
atacaataatctaaaatatgatatcgaaacgacatttgatacttagatatttaatatttctgacggaaacatcaacaacttacaattcataacggctaca |
203 |
Q |
| |
|
||||||||||||| |||||||||||||| || |||| |||||| ||||||||||||| ||| |||| ||||||||||| ||||| ||||||||| |
|
|
| T |
42409350 |
atacaataatctagaatatgatatcgaactgatatttaatacttggatatttaatattatagactgaaatatcaacaacttccaatttgtaacggctaag |
42409251 |
T |
|
| Q |
204 |
agtcacaatacttggcttgactagtaaatatagttcaagac---tttgatatttta-----ttcatctcaaaacatactaatttaatatacaagattttg |
295 |
Q |
| |
|
||| ||||||||| |||||||||||||| ||||||||||| |||| ||||||| ||| |||||||||||| ||| |||||||||| ||| | |
|
|
| T |
42409250 |
agttacaatacttagcttgactagtaaa-gtagttcaagactaatttggtattttacattgttcgtctcaaaacataataacctaatatacaacattctt |
42409152 |
T |
|
| Q |
296 |
gattataaatagttcaagactt |
317 |
Q |
| |
|
|| ||| |||| |||||||||| |
|
|
| T |
42409151 |
gactatcaataattcaagactt |
42409130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University