View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2800_high_3 (Length: 359)
Name: NF2800_high_3
Description: NF2800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2800_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 10 - 259
Target Start/End: Original strand, 30341610 - 30341859
Alignment:
| Q |
10 |
attattcttgtcaatgtcactagtcactacaaccaattataaaaaagaactttgctgctacattttcagaattagttactactactccctccttctcttt |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30341610 |
attactcttgtcaatgtcactagtcactacaaccaattataaaaaagaactttgctgctacattttcagaattagttactactactccctccttctcttt |
30341709 |
T |
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| Q |
110 |
tcctcaccctagtgccctacactatctcataattacctttcaattttaaaaacaaattagtaatgttaggtaaaatttgcagaggaaatcaaatttagca |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30341710 |
tcctcaccctagtgccctacactatctcataattacctttcaattttaaaaacaaattagtaatgttaggtaaaatttgcagaggaaatcaaatttagca |
30341809 |
T |
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| Q |
210 |
tatgatctcatcccatccatacaatttttagacttgaccttacttttagc |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30341810 |
tatgatctcatcccatccatacaatttttagacttgaccttacttttagc |
30341859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 359
Target Start/End: Original strand, 30341991 - 30342027
Alignment:
| Q |
323 |
ttaatgaaatttcgttttcagcatagatactctaaat |
359 |
Q |
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||||||||||||||||||||||||| ||||||||||| |
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| T |
30341991 |
ttaatgaaatttcgttttcagcatacatactctaaat |
30342027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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