View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2800_high_6 (Length: 344)
Name: NF2800_high_6
Description: NF2800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2800_high_6 |
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| [»] scaffold0618 (1 HSPs) |
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Alignment Details
Target: scaffold0618 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: scaffold0618
Description:
Target: scaffold0618; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 7391 - 7255
Alignment:
| Q |
1 |
aattcaactctgaaatgaatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaagaatcaccagccaaaaaattaccaacagaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7391 |
aattcaactctgaaatgaatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaagaatcaccagccaaaaaattaccaacagaaa |
7292 |
T |
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| Q |
101 |
atttaactgcatcagaaggattagtaataacatgaaa |
137 |
Q |
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| T |
7291 |
atttaactgcatcagaaggattagtaataacatgaaa |
7255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 44092520 - 44092656
Alignment:
| Q |
1 |
aattcaactctgaaatgaatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaagaatcaccagccaaaaaattaccaacagaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44092520 |
aattcaactctgaaatgaatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaagaatcaccagccaaaaaattaccaacagaaa |
44092619 |
T |
|
| Q |
101 |
atttaactgcatcagaaggattagtaataacatgaaa |
137 |
Q |
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| T |
44092620 |
atttaactgcatcagaaggattagtaataacatgaaa |
44092656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 44088073 - 44087954
Alignment:
| Q |
18 |
aatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaagaatcaccagccaaaaaattaccaacagaaaatttaactgcatcagaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44088073 |
aatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaagaatcaccagccaaaaaattaccaacagaaaatttaactgcatcagaa |
44087974 |
T |
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| Q |
118 |
ggattagtaataacatgaaa |
137 |
Q |
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|||||||||||||||||||| |
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| T |
44087973 |
ggattagtaataacatgaaa |
44087954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 44067036 - 44067155
Alignment:
| Q |
18 |
aatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaagaatcaccagccaaaaaattaccaacagaaaatttaactgcatcagaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44067036 |
aatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaagaatcaccagccaaaaaattaccaacagaaaatttaactgcatctgaa |
44067135 |
T |
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| Q |
118 |
ggattagtaataacatgaaa |
137 |
Q |
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|||||||||||||||||||| |
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| T |
44067136 |
ggattagtaataacatgaaa |
44067155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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