View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2801_high_4 (Length: 239)
Name: NF2801_high_4
Description: NF2801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2801_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 13 - 173
Target Start/End: Original strand, 9452054 - 9452213
Alignment:
| Q |
13 |
cttttaccataattttttctgccgttgtcatgccttttccagatatcattgccttaaaggttagtacatgattgaaatgtgaaaaggaaataaaaaagga |
112 |
Q |
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| T |
9452054 |
cttttaccgtaattttt-ctgtagttgccatgccttttccagatatcattgccttaaaggttagtacatgattgaaatgtgaaaaggaaataaaaaaaga |
9452152 |
T |
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| Q |
113 |
ttttgatagagcaatgttctgaacattttttcttgaattactaattattattactgtgtct |
173 |
Q |
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| T |
9452153 |
ttttgatagagcaatgttctgaacattttttcttgaattactaattattattactgtgtct |
9452213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 9452236 - 9452287
Alignment:
| Q |
173 |
tcataaatgcagacaaggatgatgaatatcccgccgattttaaggtctgttg |
224 |
Q |
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| T |
9452236 |
tcataaatgcagacaaggatgatgaatatcccgccgattttaaggtttgttg |
9452287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 9451954 - 9452006
Alignment:
| Q |
5 |
tatttcttcttttaccataattttttctgccgttgtcatgccttttccagata |
57 |
Q |
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| T |
9451954 |
tatttcttcttttaccgtaattttttctgatgttgccatgccttttccagata |
9452006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 21547425 - 21547270
Alignment:
| Q |
13 |
cttttaccataattttttctgccgttgtcatgccttttccagatatcattgccttaaaggttagtacatgattgaaatgtgaaaaggaaataaaaaagga |
112 |
Q |
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|||||||| |||||||| ||| ||||| |||||||||||||||||||||| ||||||||| | |||||||||||||||||| |||| ||||||||||||| |
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| T |
21547425 |
cttttaccgtaattttt-ctgtcgttgccatgccttttccagatatcattcccttaaagggttgtacatgattgaaatgtg-aaagtaaataaaaaagga |
21547328 |
T |
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| Q |
113 |
ttttgatagagcaatgttctgaaca-ttttttcttgaattactaattattattactgt |
169 |
Q |
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| T |
21547327 |
atttgatagagcaatgttctgaacatttttttcttgaattactaattattattactgt |
21547270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 173 - 223
Target Start/End: Complemental strand, 21547241 - 21547191
Alignment:
| Q |
173 |
tcataaatgcagacaaggatgatgaatatcccgccgattttaaggtctgtt |
223 |
Q |
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||||||| ||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
21547241 |
tcataaaggcaaacaaggatgatgaatatcctgccgattttaaggtctgtt |
21547191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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