View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2801_high_5 (Length: 213)
Name: NF2801_high_5
Description: NF2801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2801_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 49735795 - 49735993
Alignment:
| Q |
1 |
tgtataaggcacaaacccttgcatctgtgctgaatccttgcatggatttgatttgtaaatgtccatttactaacagtagaggtagcaaaacaagaatgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49735795 |
tgtataaggcacaaacccttgcatctgtgctgaatccttgcatggatttgatttgtaaatgtccatttactaacagtagaggtagcaaaacaagaatgat |
49735894 |
T |
|
| Q |
101 |
gagagaaagctgccagctagtctcaaagccaattaccaaggctgtaattacagtggcaatatcttgaacaagcaaaccgagtgcatccccaaccaaagt |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
49735895 |
gagagaaagctgccagctagtctcaaagccaattaccaaggctgtaattacagtggcaatatcttgaactagcaaaccgagtgcatccccaaccaaagt |
49735993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 5 - 199
Target Start/End: Complemental strand, 51214311 - 51214117
Alignment:
| Q |
5 |
taaggcacaaacccttgcatctgtgctgaatccttgcatggatttgatttgtaaatgtccatttactaacagtagaggtagcaaaacaagaatgatgaga |
104 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||| |||||||| |||| |||||||||||| |||||||| | ||||||||||||||||||| |
|
|
| T |
51214311 |
taaggcacaaacctttgcgtctgtgctgaatccttgcatggccttgatttgaaaatatccatttactaatagtagaggcaacaaaacaagaatgatgaga |
51214212 |
T |
|
| Q |
105 |
gaaagctgccagctagtctcaaagccaattaccaaggctgtaattacagtggcaatatcttgaacaagcaaaccgagtgcatccccaaccaaagt |
199 |
Q |
| |
|
||||||||||| | | || |||| |||||||||||||||||| || || | |||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
51214211 |
gaaagctgccaatttgcctgaaaggaaattaccaaggctgtaataactgtagagatatcttgaacaagcaaaccgagtgcgtcaccaaccaaagt |
51214117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University