View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2801_low_1 (Length: 629)
Name: NF2801_low_1
Description: NF2801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2801_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 11 - 420
Target Start/End: Original strand, 38185586 - 38186004
Alignment:
| Q |
11 |
cacagacacaatattacagtggaggaaaagatgagttgtggattctgcagaattgttacacaaaacacaaacccgagaactttccggcggaagagagttt |
110 |
Q |
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| T |
38185586 |
cacagacacaatattacagtggaggaaaagatgagttgtggattctgcagaattgttacacaaaacacaaacctgagaactttccggcggaagagagttt |
38185685 |
T |
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| Q |
111 |
ctaatagctaggttgattttcgttggaattctatcattttcgttggaatacatatcatatgtattgtaggatacttactacactgatcaggaatattact |
210 |
Q |
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| T |
38185686 |
ctaatagctaggttgattttcgttggaattctatcattttcgttggaatacatatcatatgtattgtaggatacttactacactgatcaggaatattact |
38185785 |
T |
|
| Q |
211 |
aacagtccataaatttcctctgattgaattgagaaggcacacacatgtt---------atttctcactaatttctgcaagttaacttttcctcaaactaa |
301 |
Q |
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| T |
38185786 |
aacagtccataaatttcctctgattgaattgagaaggcacacacatgttatttcccaaatttctcaccaatttctgcaagttaacttttcctcaaactaa |
38185885 |
T |
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| Q |
302 |
attgctatcatcaccctataagtcattcagaggattcaactgggcattgaacttcatatacatagttccagccaattctaatcagtatttattttcagat |
401 |
Q |
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| T |
38185886 |
attgctatcatcgccctataagtcattcagaggattcaactgggcattgaacttcatatacatagttccagccaattctaatcagtatttattttcagct |
38185985 |
T |
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| Q |
402 |
aactaataggcaaataaca |
420 |
Q |
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| T |
38185986 |
aactaataggcaaataaca |
38186004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 411 - 607
Target Start/End: Original strand, 38186415 - 38186629
Alignment:
| Q |
411 |
gcaaataacaacccctataagtcatacaaggattcaactagtgatttatcaggttctttatattgggccta-------------------tttcagcgac |
491 |
Q |
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|||| ||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
38186415 |
gcaagtaacaccccctatatgtcatacaaggattcaactagtcatttatcaggttctttatattgggcctaactcaccctttataaactatttcagcgaa |
38186514 |
T |
|
| Q |
492 |
tttaaatggacagatacaccatgtgaacagtatttagcttggtgtgtggcccaaataaatgggacagatactgtataaagttccaatactgacactgcat |
591 |
Q |
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| T |
38186515 |
tttaaatggacagatacaccacgtgaacagtatttagcttggtgtgtggcccgaataaat-ggacagatactgtataaagttccaatactgacactgcat |
38186613 |
T |
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| Q |
592 |
cagacatgagacactt |
607 |
Q |
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| T |
38186614 |
cagacataagacactt |
38186629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 34821600 - 34821678
Alignment:
| Q |
69 |
cacaaaacacaaacccgagaactttccggcggaagagagtttctaatagctaggttgattttcgttggaattctatcat |
147 |
Q |
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||||||||||||||| | |||| |||||||||||||| || |||||||| ||||||||||| ||||| |||||||||| |
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| T |
34821600 |
cacaaaacacaaacctgtgaaccatccggcggaagagaattcctaatagcaaggttgatttttgttgggattctatcat |
34821678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 680311 - 680271
Alignment:
| Q |
157 |
aatacatatcatatgtattgtaggatacttactacactgat |
197 |
Q |
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| T |
680311 |
aatacatatcttatgtattgtaggatacttactaccctgat |
680271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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