View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2801_low_2 (Length: 579)
Name: NF2801_low_2
Description: NF2801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2801_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 489; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 18 - 562
Target Start/End: Original strand, 24136560 - 24137103
Alignment:
| Q |
18 |
atgaaaaggaatgggtgaagggcggaaaggacaacatagcggaccccagtcttcaccacctgtccatgaagtcgtttccctaacaccaaagcagccatac |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24136560 |
atgaaaaggaatgggtgaagggcggaaaggacaacatagcgtacccctgtcttcaccacctgtccatgaagtcgtttccctaacaccaaagcagccatac |
24136659 |
T |
|
| Q |
118 |
caacacatgtgcttaaagcaaacataaggtagatctatttaaatttttgtcgtcccttttcatcttcaccagcatgtccatagcttattcatagtgacca |
217 |
Q |
| |
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|| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24136660 |
cagcacatgtgcttaaggcaaacataaggtagatctatttaaatttttgccgtcccttttcatcttcaccagcatgtccatagcttattcatagtgacca |
24136759 |
T |
|
| Q |
218 |
gtcttaccctaacccgcaataattgcttcccaagatgcgcaatcgcgttgagccatcatgtcaaacaatttcctagcttgagcaatatcttcgttctgac |
317 |
Q |
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|||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24136760 |
gtcttagcctaaccagcaataattgcttcccaagatgcacaatcgcgttgagccatcatgtcaaacaatttcctagcttgagcaatatcttcgttctgac |
24136859 |
T |
|
| Q |
318 |
catagccgttgatcatggtttccaggaacctacattccgacaaggcattgcctcatacaattcccttgccatatccattttcttgttttgcacatatcat |
417 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
24136860 |
catagccgttgatcatggtttccaggaacctacattctgacaaggcattacctcatacaattccctt-ccatatccattttcttgttttgcacatatcat |
24136958 |
T |
|
| Q |
418 |
gcaatcatcacattgtatgtcatctttctttttcccggcatttcatcgaaaactcctctcgcttcatccaacattccactatgcacatatgcaaacacca |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24136959 |
gcaatcatcacattgtatgtcatctttctttttcccggcatttcatcgaaaactcctctcgcttcatccaacattccactatgcacatatgcaaacacca |
24137058 |
T |
|
| Q |
518 |
ttgttgttcacgtgaaaacaccccgcaccggagactcctcaaaca |
562 |
Q |
| |
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||||||| ||||||||||||||| ||||||||||||||||||||| |
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|
| T |
24137059 |
ttgttgtccacgtgaaaacaccctgcaccggagactcctcaaaca |
24137103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 562
Target Start/End: Original strand, 24134246 - 24134792
Alignment:
| Q |
18 |
atgaaaaggaatgggtgaagggcggaaaggacaacatagcggaccccagtcttcaccacctgtccatgaagtcgtttccctaacaccaaagcagccatac |
117 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||| | | |||| ||||||||| ||| |||||||||| |||||| |||||||||||||||||||| |
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| T |
24134246 |
atgaaaaggaatgggtgaagggtggaaaggacaacataccaggcccctgtcttcaccgcctatccatgaagttgtttccttaacaccaaagcagccatac |
24134345 |
T |
|
| Q |
118 |
caacacatgtgcttaaagca-aacataaggtagatctatttaaatttttgtcgtcccttttcatcttcaccagcatgtccatagcttattcatagtgacc |
216 |
Q |
| |
|
|| |||||||||| ||| | ||||||| ||| ||||| |||| ||| | | |||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
24134346 |
cagcacatgtgctcaaatgacaacataatgtatatctacataaactttcgccatcccttttcatcttcaccagcatgtccatagcttcttcataatgacc |
24134445 |
T |
|
| Q |
217 |
agtcttaccctaacccgcaataattgcttcccaagatgcgcaatcgcgttgagccatcatgtcaaacaatttcctagcttgagcaatatcttcgttctga |
316 |
Q |
| |
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||||| | ||||||| |||||||||| |||||||| | |||||||| | ||||||||||||||||||||| | | |||||||||||| | | |||||| |
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| T |
24134446 |
agtctgagcctaaccaccaataattgccacccaagatacacaatcgcggttagccatcatgtcaaacaatttgccaacttgagcaatatttcctttctga |
24134545 |
T |
|
| Q |
317 |
ccatagccgttgatcatggt-ttccaggaacctacattccgacaaggcattgcctcatacaattcccttgccatatccattttcttgttttgcacatatc |
415 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||| ||| |||||||||||| |||||||||||||||||||||||| ||||| |||||||| || |
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|
| T |
24134546 |
tcatagccgttgatcatggtattccacgaacctacattccaacatggcattgcctcaaacaattcccttgccatatccatttgcttgtattgcacatttc |
24134645 |
T |
|
| Q |
416 |
atgcaatcatcacattgtatgtcatctttctttttcccggcatttcatcgaaaactcctctcgcttcatccaacattccactatgcacatatgcaaacac |
515 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| | ||||||||||||||| |||||||||||||||| |
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|
| T |
24134646 |
ccttaaccatcacattgtatgtcatctttcattttcccggcatttcatcgaaaactcttctcgcatgatccaacattccactctgcacatatgcaaacat |
24134745 |
T |
|
| Q |
516 |
cattgttgttcacgtgaaaacaccccgcaccggagactcctcaaaca |
562 |
Q |
| |
|
||||||||| ||| |||||||| |||||||||||||||||||||||| |
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|
| T |
24134746 |
cattgttgtccacctgaaaacatcccgcaccggagactcctcaaaca |
24134792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 86 - 221
Target Start/End: Original strand, 24134080 - 24134216
Alignment:
| Q |
86 |
aagtcgtttccctaacaccaaagcagccataccaacacatgtgcttaaagcaa-acataaggtagatctatttaaatttttgtcgtcccttttcatcttc |
184 |
Q |
| |
|
|||| ||||||||| || ||||||||| ||| |||||||||||| |||||| |||||||||||||||||||| | ||| | ||||||||||||||||| |
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|
| T |
24134080 |
aagttgtttccctagcatgaaagcagccttacgaacacatgtgctcaaagcaccacataaggtagatctatttacactttcgccgtcccttttcatcttc |
24134179 |
T |
|
| Q |
185 |
accagcatgtccatagcttattcatagtgaccagtct |
221 |
Q |
| |
|
||||||||||||||| ||| |||||||||| |||||| |
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|
| T |
24134180 |
accagcatgtccataacttcttcatagtgatcagtct |
24134216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 66 - 562
Target Start/End: Complemental strand, 45149295 - 45148797
Alignment:
| Q |
66 |
gtcttcaccacctgtccatgaagtcgtttccctaacaccaaagcagccataccaacacatgtgcttaaagca-aacataaggtagatctatttaaatttt |
164 |
Q |
| |
|
||||||||| |||||||||||| | ||||||||||||||||||||||||||||| |||||||||| |||||| |||| |||||||||||||||||| ||| |
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|
| T |
45149295 |
gtcttcaccgcctgtccatgaacttgtttccctaacaccaaagcagccataccagcacatgtgctcaaagcacaacaaaaggtagatctatttaaacttt |
45149196 |
T |
|
| Q |
165 |
tgtcgtcccttttcatcttcaccagcatgtccatagcttattcatagtgaccagtcttaccctaacccgcaataattgcttcccaagatgcgcaatcgcg |
264 |
Q |
| |
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|| ||||||||||||||||||||||||||| |||| ||| ||||||||||||||||| | | ||||| ||||||||||| |||||||| | |||||||| |
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|
| T |
45149195 |
tgccgtcccttttcatcttcaccagcatgtgcataactttttcatagtgaccagtctgagcataaccagcaataattgccgcccaagatacacaatcgcg |
45149096 |
T |
|
| Q |
265 |
ttgagccatcatgtcaaacaatttcctagcttgagcaatatcttcgttctgaccatagccgttgatcatggt-ttccaggaacctacattccgacaaggc |
363 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||| ||||| ||||| ||||||||||||||||||||| |
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|
| T |
45149095 |
ctgagtcatcatgtcaaacaattccctagcttgagcaatatctccgttctgaccatagccgctgataatggtattccatgaacctacattccgacaaggc |
45148996 |
T |
|
| Q |
364 |
attgcctcatacaattcccttgccatatccattttcttgttttgcacatatcatgcaatcatcacattgtatgtcatctttctttttcccggcatttcat |
463 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||| |
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|
| T |
45148995 |
attgcctcaaacaattcccttgccatatccattttcttgtattgcacatatcctgcaatcatcacattgtatgccatctctctttttcccggcatttcat |
45148896 |
T |
|
| Q |
464 |
cgaaaactcctctcgcttcatccaacattccactatgcacatatgcaaacaccattgttgttcacgtgaaaacaccccgcaccggagactcctcaaaca |
562 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||| |
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|
| T |
45148895 |
cgaaaactcttctcgcttcatccaacattccactctgcacatatgcaaacaccattgctgtccacgtgaaaacatcccgcaccggagactcctcaaaca |
45148797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 67 - 436
Target Start/End: Complemental strand, 45165655 - 45165284
Alignment:
| Q |
67 |
tcttcaccacctgtccatgaagtcgtttccctaacaccaaagcagccataccaacacatgtgcttaaagca-aacataaggtagatctatttaaattttt |
165 |
Q |
| |
|
|||||||| |||| ||||||| | ||||||| ||| |||||||||| ||| || |||||||||| |||||| ||| || |||| ||||||||| ||| |
|
|
| T |
45165655 |
tcttcaccgcctgcccatgaatttgtttccccaactccaaagcagcaatatcagcacatgtgctcaaagcacaaccaaaagtagccctatttaaactttc |
45165556 |
T |
|
| Q |
166 |
gtcgtcccttttcatcttcaccagcatgtccatagcttattcatagtgaccagtcttaccctaacccgcaataattgcttcccaagatgcgcaatcgcgt |
265 |
Q |
| |
|
|||| ||| |||| || | ||||| || ||||| |||||||||||| ||| | | ||||| |||||||| || |||||||| | || || || |
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|
| T |
45165555 |
tccgtcttgttttatctctacaaacatgttcagagcttcttcatagtgaccgctctgagcataaccagcaataatagccgcccaagatacacagtcacgc |
45165456 |
T |
|
| Q |
266 |
tgagccatcatgtcaaacaatttcctagcttgagcaatatcttcgttctgaccatagccgttgatcatggt-ttccaggaacctacattccgacaaggca |
364 |
Q |
| |
|
|| | |||||| ||||| ||||| ||||| |||||||| ||| | ||||||||||||| | |||||||| ||||| |||| || ||||||||| |||| |
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|
| T |
45165455 |
tgtggcatcatatcaaagaattttctagcctgagcaatgtctccaatctgaccatagcctgtaatcatggtattccatgaacttatattccgacagggca |
45165356 |
T |
|
| Q |
365 |
ttgcctcatacaattcccttgccatatccattttcttgttttgcacatatcatgcaatcatcacattgtatg |
436 |
Q |
| |
|
| | |||| |||| |||||||| || ||||||||||| |||||||||| | |||||||| ||||||||| |
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|
| T |
45165355 |
tagactcaaacaactcccttgcgatgtccattttcttagtttgcacataacccgcaatcattgcattgtatg |
45165284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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