View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2801_low_5 (Length: 251)

Name: NF2801_low_5
Description: NF2801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2801_low_5
NF2801_low_5
[»] chr4 (14 HSPs)
chr4 (11-235)||(4335145-4335369)
chr4 (11-235)||(4123996-4124220)
chr4 (11-235)||(4344446-4344670)
chr4 (11-235)||(4360877-4361101)
chr4 (11-235)||(4320676-4320900)
chr4 (12-235)||(4133480-4133703)
chr4 (16-233)||(6621566-6621783)
chr4 (25-142)||(6532382-6532499)
chr4 (16-71)||(6650872-6650927)
chr4 (16-71)||(6772909-6772964)
chr4 (16-71)||(6815275-6815330)
chr4 (16-213)||(6796592-6796789)
chr4 (31-71)||(6498747-6498787)
chr4 (35-131)||(6837098-6837194)
[»] chr6 (23 HSPs)
chr6 (11-235)||(5690216-5690440)
chr6 (25-235)||(5447401-5447611)
chr6 (11-235)||(5128474-5128698)
chr6 (13-235)||(5383128-5383350)
chr6 (22-235)||(5073965-5074178)
chr6 (16-235)||(5066751-5066970)
chr6 (16-235)||(5102671-5102890)
chr6 (16-235)||(5344666-5344885)
chr6 (25-235)||(5181984-5182194)
chr6 (11-235)||(5354671-5354895)
chr6 (25-235)||(5433849-5434059)
chr6 (18-235)||(5446964-5447181)
chr6 (11-235)||(5096508-5096732)
chr6 (16-235)||(5157685-5157904)
chr6 (25-235)||(5350208-5350418)
chr6 (18-235)||(5284446-5284663)
chr6 (16-235)||(5425715-5425934)
chr6 (14-235)||(5176542-5176763)
chr6 (18-235)||(5257391-5257608)
chr6 (16-235)||(5370376-5370595)
chr6 (14-235)||(5278369-5278590)
chr6 (16-235)||(5243924-5244143)
chr6 (11-150)||(5147038-5147177)
[»] chr5 (1 HSPs)
chr5 (32-233)||(8877430-8877631)
[»] scaffold0294 (1 HSPs)
scaffold0294 (16-235)||(8957-9176)
[»] chr7 (3 HSPs)
chr7 (22-235)||(36213886-36214099)
chr7 (25-235)||(34724643-34724853)
chr7 (25-235)||(18935200-18935410)
[»] chr3 (4 HSPs)
chr3 (25-235)||(47986909-47987119)
chr3 (25-235)||(47996196-47996406)
chr3 (25-235)||(48005483-48005693)
chr3 (25-235)||(48014768-48014978)
[»] chr2 (1 HSPs)
chr2 (114-203)||(22584303-22584392)
[»] scaffold0813 (1 HSPs)
scaffold0813 (16-71)||(5047-5102)
[»] scaffold0552 (1 HSPs)
scaffold0552 (16-71)||(8506-8561)
[»] scaffold0286 (1 HSPs)
scaffold0286 (16-71)||(6464-6519)
[»] scaffold0373 (1 HSPs)
scaffold0373 (35-131)||(9514-9610)


Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 235
Target Start/End: Original strand, 4335145 - 4335369
Alignment:
Q  11 cacagacccctgatttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4335145 cacagacccctgatttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaa 4335244  T
Q  111 gaaagttcttttgataaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcagga 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4335245 gaaagttcttttgataaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcagga 4335344  T
Q  211 tgtttaaagattgacaagttggaag 235  Q
    |||||||||||||||||||||||||    
T  4335345 tgtttaaagattgacaagttggaag 4335369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 4124220 - 4123996
Alignment:
Q  11 cacagacccctgatttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaa 110  Q
    ||||||||||||| ||||||||||||||||| |||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4124220 cacagacccctgacttttcatacttgcctaaccttgaaaagctggtactcaaagattgtccaaggctgtctgaggtatcccatacaattggacatcttaa 4124121  T
Q  111 gaaagttcttttgataaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcagga 210  Q
    |||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||| ||| ||||||| ||||||||||||||||||||||| |||    
T  4124120 gaaagttcttttgataaatttgaaagattgtactagcctttctaaccttccaagaaacatttattcgttgaaatctctgaaaactctcattctatcggga 4124021  T
Q  211 tgtttaaagattgacaagttggaag 235  Q
    ||||||| |||||||||||||||||    
T  4124020 tgtttaatgattgacaagttggaag 4123996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 11 - 235
Target Start/End: Original strand, 4344446 - 4344670
Alignment:
Q  11 cacagacccctgatttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaa 110  Q
    ||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| | ||||| |  ||||||||||| ||    
T  4344446 cacagacgcctgacttttcatacttgcctaatcttgaaaagctagtactcaaagattgtccaaggctgtctgagatttcccaaagtattggacatctcaa 4344545  T
Q  111 gaaagttcttttgataaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcagga 210  Q
     ||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  4344546 caaaattcttttgataaatttgaaaaattgtattagcctttgtaaccttccaagaaacatctatacgttgaaatctctgaaaactctcattctatctgga 4344645  T
Q  211 tgtttaaagattgacaagttggaag 235  Q
    ||||||| |||||||||||||||||    
T  4344646 tgtttaatgattgacaagttggaag 4344670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 11 - 235
Target Start/End: Original strand, 4360877 - 4361101
Alignment:
Q  11 cacagacccctgatttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaa 110  Q
    ||||||| ||||| |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| | ||||| |  ||||||||||| ||    
T  4360877 cacagacgcctgacttttcatacttgcctaatcttgaaaagctagtacttaaagattgtccaaggctgtctgagatttcccaaagtattggacatctcaa 4360976  T
Q  111 gaaagttcttttgataaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcagga 210  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  4360977 gaaaattcttttgataaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaaatctctgaaaactctcattctatctgga 4361076  T
Q  211 tgtttaaagattgacaagttggaag 235  Q
    |||| || |||||||| ||||||||    
T  4361077 tgttcaatgattgacacgttggaag 4361101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 4320900 - 4320676
Alignment:
Q  11 cacagacccctgatttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaa 110  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||| ||| ||||||| || ||||||||| |||| |||||||  ||||||||||| ||    
T  4320900 cacagacccctgacttttcatacttgcctaatcttgaaaagctagtgctcgaagattgcccaaggctgtctcaggtttcccatagcattggacatctcaa 4320801  T
Q  111 gaaagttcttttgataaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcagga 210  Q
     |||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||  ||||||| |||||||||||||| |||    
T  4320800 aaaagttgttttgataaatttgaaagattgtattagcctttgtagccttccaagaaacatctatacgttgaaaactctgaatactctcattctatcggga 4320701  T
Q  211 tgtttaaagattgacaagttggaag 235  Q
    ||||||| |||||||||||||||||    
T  4320700 tgtttaatgattgacaagttggaag 4320676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 12 - 235
Target Start/End: Complemental strand, 4133703 - 4133480
Alignment:
Q  12 acagacccctgatttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaag 111  Q
    ||||||||| ||||||||| || |||||||||| ||||| ||| |||||||||||||||| |||||||||||||| |||||||| ||||| |||||  |     
T  4133703 acagaccccagatttttcacacatgcctaatctagaaaaactaatactcaaagattgtccaaggctgtctgaggtttcccataccattggtcatctccat 4133604  T
Q  112 aaagttcttttgataaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcaggat 211  Q
    ||||||||  | |||||||||||||| || | ||||||| ||||||||||||||| ||||||| ||||||| |||||||||||||| ||||| || || |    
T  4133603 aaagttctcattataaatttgaaagactgtactagccttcgtaaccttccaagaaccatctattcgttgaaatctctgaaaactcttattctttctggct 4133504  T
Q  212 gtttaaagattgacaagttggaag 235  Q
    ||||||  |||||||| |||||||    
T  4133503 gtttaattattgacaaattggaag 4133480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 233
Target Start/End: Complemental strand, 6621783 - 6621566
Alignment:
Q  16 acccctgatttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaagaaag 115  Q
    ||||| |||||||||||| |||||||||| ||||| ||||| |||||||| ||||| ||  |||||   || |||||||  ||||||  |||  | |||     
T  6621783 accccagatttttcatacatgcctaatctcgaaaagctagtgctcaaagactgtccaagtttgtctacagtctcccatagcattggatctctccataaac 6621684  T
Q  116 ttcttttgataaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcaggatgttt 215  Q
    ||||  | |||||||||| ||| |||||  | ||| |||| |||||||||| ||||||||  || || |||||  ||||| | ||||| ||||||||||     
T  6621683 ttctccttataaatttgacagactgcatacgtcttcgtaaacttccaagaagcatctataaattaaaatctctagaaactttaattctttcaggatgttc 6621584  T
Q  216 aaagattgacaagttgga 233  Q
     | ||||||||| |||||    
T  6621583 catgattgacaaattgga 6621566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 142
Target Start/End: Complemental strand, 6532499 - 6532382
Alignment:
Q  25 ttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaagaaagttcttttga 124  Q
    ||||||||  ||||||||||||||||  ||||||||||||| ||||| ||  |||||| ||| |||||||  ||||||  |||  | ||| ||||| |||    
T  6532499 ttttcatatatgcctaatcttgaaaagttagtactcaaagactgtccaagtttgtctgcggtctcccatagcattggatctctccaaaaacttcttctga 6532400  T
Q  125 taaatttgaaagattgca 142  Q
    ||||||||| ||| ||||    
T  6532399 taaatttgacagactgca 6532382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 6650872 - 6650927
Alignment:
Q  16 acccctgatttttcatacttgcctaatcttgaaaacctagtactcaaagattgtcc 71  Q
    ||||| || ||||||| | |||||||||||||||| |||||||||||||| |||||    
T  6650872 accccagacttttcattcatgcctaatcttgaaaagctagtactcaaagactgtcc 6650927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 6772909 - 6772964
Alignment:
Q  16 acccctgatttttcatacttgcctaatcttgaaaacctagtactcaaagattgtcc 71  Q
    ||||| || |||||||||||||| ||||||||||| |||||||||||  |||||||    
T  6772909 accccagacttttcatacttgccgaatcttgaaaagctagtactcaagaattgtcc 6772964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 6815275 - 6815330
Alignment:
Q  16 acccctgatttttcatacttgcctaatcttgaaaacctagtactcaaagattgtcc 71  Q
    ||||| || ||| |||||||||| ||||||||||| |||||||||||| |||||||    
T  6815275 accccagactttacatacttgccaaatcttgaaaagctagtactcaaaaattgtcc 6815330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 6796592 - 6796789
Alignment:
Q  16 acccctgatttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaagaaag 115  Q
    ||||| || ||| ||||||| || ||||||||||| |||||||| ||| ||||||| ||  |||||  ||| |||||||  ||||||  |||  | |||     
T  6796592 accccagactttacatacttaccaaatcttgaaaagctagtactaaaaaattgtccaagtttgtctacggtctcccatagcattggatctctacataaaa 6796691  T
Q  116 ttcttttgataaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcaggatgt 213  Q
    ||||| | |||||||||| ||| |||||  | ||| | || |||||||||| ||||||||| || || |||||  ||||| | ||||| || ||||||    
T  6796692 ttcttctcataaatttgacagactgcataggtcttcggaaacttccaagaagcatctatacattaaaatctctagaaactttgattctttctggatgt 6796789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 6498787 - 6498747
Alignment:
Q  31 tacttgcctaatcttgaaaacctagtactcaaagattgtcc 71  Q
    |||||||||||| ||||||| |||||||||||||| |||||    
T  6498787 tacttgcctaatattgaaaagctagtactcaaagactgtcc 6498747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 131
Target Start/End: Original strand, 6837098 - 6837194
Alignment:
Q  35 tgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaagaaagttcttttgataaattt 131  Q
    |||| ||||||||||| |||||||||||||| ||||| ||  |||||| ||| |||||||  ||||||  |||  | ||| ||||| ||||||||||    
T  6837098 tgccgaatcttgaaaagctagtactcaaagactgtccaagtttgtctgcggtctcccatagcattggatctctccataaacttcttctgataaattt 6837194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 4e-50; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 5690440 - 5690216
Alignment:
Q  11 cacagacccctgatttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaa 110  Q
    |||||||||| || ||||||  | |||||||||||||||| ||| |||||||||||||||| ||| ||  |||||| |||||||  |||||||||||  |    
T  5690440 cacagaccccagacttttcaatcatgcctaatcttgaaaagctaatactcaaagattgtccaaggttgcgtgaggtttcccatagcattggacatctcga 5690341  T
Q  111 gaaagttcttttgataaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcagga 210  Q
     ||| ||||| ||||||||||| ||||||| |||||||||| |||||||||||||| |||||||| |||||| |||||||||||||||||||| || ||     
T  5690340 caaaattcttctgataaatttggaagattgtattagcctttctaaccttccaagaagcatctataagttgaaatctctgaaaactctcattctttccggg 5690241  T
Q  211 tgtttaaagattgacaagttggaag 235  Q
    |||| || |||| ||||||||||||    
T  5690240 tgttcaatgattaacaagttggaag 5690216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 25 - 235
Target Start/End: Original strand, 5447401 - 5447611
Alignment:
Q  25 ttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaagaaagttcttttga 124  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||| | | |||||||||| || | ||  ||||||||||| || ||| ||||| |||    
T  5447401 ttttcatgcttgcctaatcttgaaaagctagtactcaaagattgtccaatgttgtctgaggtttctcctagcattggacatctcaataaaattcttctga 5447500  T
Q  125 taaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcaggatgtttaaagattga 224  Q
    |||||||| ||||||| ||| ||||  ||||||| ||||||| |||||||| |||||| ||| |||||||||||||||| || || ||||||||||||||    
T  5447501 taaatttggaagattgtattggcctaggtaacctcccaagaagcatctataagttgaaatctttgaaaactctcattctttctggttgtttaaagattga 5447600  T
Q  225 caagttggaag 235  Q
    |||| ||||||    
T  5447601 caagctggaag 5447611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 5128698 - 5128474
Alignment:
Q  11 cacagacccctgatttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaa 110  Q
    |||| ||||| || |||||||| || |||||||||||||| |||||||||||||||||| | | | |||||||||| ||   ||  || |||||||| ||    
T  5128698 cacacaccccagacttttcatatttacctaatcttgaaaagctagtactcaaagattgttcaatgttgtctgaggtttctactagcatcggacatctcaa 5128599  T
Q  111 gaaagttcttttgataaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcagga 210  Q
     ||| ||||| ||||||||||| |||||||||||||||| |||| ||| ||||||| |||||||| |||||| ||| |||||||||||||||| || ||     
T  5128598 taaaattcttctgataaatttggaagattgcattagcctatgtagcctcccaagaagcatctataagttgaaatctttgaaaactctcattctttctggt 5128499  T
Q  211 tgtttaaagattgacaagttggaag 235  Q
    ||| ||| |||||||||||||||||    
T  5128498 tgtataatgattgacaagttggaag 5128474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 5383128 - 5383350
Alignment:
Q  13 cagacccctgatttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaaga 112  Q
    |||||||| || || ||| | ||||||||||||||||| |||||||||  ||||||||||||| |||| ||||| || | ||  |||||| |||| ||||    
T  5383128 cagaccccagacttctcaaatttgcctaatcttgaaaagctagtactcgcagattgtccgaggttgtccgaggtttctcctagcattggagatctcaaga 5383227  T
Q  113 aagttcttttgataaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcaggatg 212  Q
    || ||||| |||| |||||| |||| ||  ||||||| |||| ||| ||||||| ||| |||| |||||| |||||||||||||||||||| || || ||    
T  5383228 aaattcttctgattaatttggaagactgtgttagcctatgtagcctcccaagaagcatttataagttgaaatctctgaaaactctcattctttctggttg 5383327  T
Q  213 tttaaagattgacaagttggaag 235  Q
    ||||||||||  |||||||||||    
T  5383328 tttaaagattaccaagttggaag 5383350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 235
Target Start/End: Complemental strand, 5074178 - 5073965
Alignment:
Q  22 gatttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaagaaagttcttt 121  Q
    ||||||||| ||||||||||||||||| | |||||||||| ||||||||| ||| |||| ||||| || ||||  |||| |||||| || ||| |||||     
T  5074178 gatttttcaaacttgcctaatcttgaacaactagtactcacagattgtccaaggttgtcagaggtttctcatagtattgaacatctcaataaaattcttc 5074079  T
Q  122 tgataaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcaggatgtttaaagat 221  Q
    ||||||||||| ||||||| ||| | |||   | |||||||||||  ||||||| |||||| ||||| |||||||||||||| || || |||| || |||    
T  5074078 tgataaatttggaagattgtattggtcttcagagccttccaagaagtatctataagttgaaatctctaaaaactctcattctttccgggtgttcaatgat 5073979  T
Q  222 tgacaagttggaag 235  Q
    ||||||||||||||    
T  5073978 tgacaagttggaag 5073965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 5066970 - 5066751
Alignment:
Q  16 acccctgatttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaagaaag 115  Q
    |||||||| ||||||||  |||||||||||||||| |||||||||||||||||||| |   |||| ||||| || | |||||| ||| | || |   ||     
T  5066970 acccctgacttttcatatatgcctaatcttgaaaagctagtactcaaagattgtccaatattgtccgaggtttctcctacaataggaaaactcagtgaaa 5066871  T
Q  116 ttcttttgataaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcaggatgttt 215  Q
    ||||| | ||| ||||| |||||||  |||||||| ||||||||||||||| |||||||| |||||| ||||| |||||||||||||| || || ||| |    
T  5066870 ttcttctaatagatttggaagattgtgttagccttcgtaaccttccaagaagcatctataagttgaaatctcttaaaactctcattctttctgggtgtat 5066771  T
Q  216 aaagattgacaagttggaag 235  Q
    || |||||||||||| ||||    
T  5066770 aatgattgacaagttagaag 5066751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 5102890 - 5102671
Alignment:
Q  16 acccctgatttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaagaaag 115  Q
    |||||||| ||||||||||||||||||||||| || || ||||||||||||||||| | | |||||||||| |  | ||| |||||| |||| |   ||     
T  5102890 acccctgacttttcatacttgcctaatcttgagaagctggtactcaaagattgtccaatgttgtctgaggtttgtcctaccattggagatctcactgaaa 5102791  T
Q  116 ttcttttgataaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcaggatgttt 215  Q
    | ||| | ||| ||||| |||||||  |||||||| ||| ||||||||||| |||||||| |||||| ||| ||||||  |||||||| || || |||||    
T  5102790 tacttctaatagatttggaagattgtgttagccttcgtagccttccaagaagcatctataagttgaaatctttgaaaatactcattctttctgggtgttt 5102691  T
Q  216 aaagattgacaagttggaag 235  Q
    || |||||||||||||||||    
T  5102690 aatgattgacaagttggaag 5102671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 5344666 - 5344885
Alignment:
Q  16 acccctgatttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaagaaag 115  Q
    ||||| || ||||| ||||| ||||||||||||||  ||||||||   |||||||| ||  ||| |||| | || ||||  |||||| |||| ||||||     
T  5344666 accccggacttttcttacttacctaatcttgaaaagttagtactcgtggattgtccaagtttgtgtgagatttctcatagcattggagatctcaagaaaa 5344765  T
Q  116 ttcttttgataaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcaggatgttt 215  Q
    ||||| | || |||||| |||| || |||||||| |||| ||| ||||||| |||||||| |||||| ||||| |||||||||||||| || || |||||    
T  5344766 ttcttctcattaatttggaagactgtattagcctatgtagcctgccaagaagcatctataagttgaattctctaaaaactctcattctttcgggttgttt 5344865  T
Q  216 aaagattgacaagttggaag 235  Q
    ||||||||||||||||||||    
T  5344866 aaagattgacaagttggaag 5344885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 25 - 235
Target Start/End: Complemental strand, 5182194 - 5181984
Alignment:
Q  25 ttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaagaaagttcttttga 124  Q
    |||||| |||||||||| |||||| |  ||||||||| ||||||||||| | ||||||| || ||||| |  |||||| |||| || ||| | |||||||    
T  5182194 ttttcaaacttgcctaaccttgaacagttagtactcacagattgtccgaagttgtctgaagtttcccaaagtattggagatctcaataaaatacttttga 5182095  T
Q  125 taaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcaggatgtttaaagattga 224  Q
    |||||||| |||||||||||||||||   | ||||||||||| ||||||||  ||||| ||  | || ||||||||||| || || ||||||| ||||||    
T  5182094 taaatttggaagattgcattagccttcaaagccttccaagaagcatctataatttgaaatcattaaacactctcattctttctgggtgtttaatgattga 5181995  T
Q  225 caagttggaag 235  Q
    |||||||||||    
T  5181994 caagttggaag 5181984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 5354895 - 5354671
Alignment:
Q  11 cacagacccctgatttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaa 110  Q
    |||| |||||||| ||||| ||| |||||||||||||||| || ||||||||||||||||| | | | ||||| || || |  |  ||||||||||| ||    
T  5354895 cacatacccctgacttttcttacatgcctaatcttgaaaagcttgtactcaaagattgtccaatgttatctgaagtttctccaagcattggacatctcaa 5354796  T
Q  111 gaaagttcttttgataaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcagga 210  Q
     ||| ||||| |||||||||| ||||| ||||||| ||||| || ||| ||||||| |||||| | |||||| ||| |||||||||||||||| || ||     
T  5354795 taaaattcttctgataaatttcaaagactgcattaacctttctagcctcccaagaagcatctacaagttgaaatctttgaaaactctcattctttctggt 5354696  T
Q  211 tgtttaaagattgacaagttggaag 235  Q
    |||  |||| | |||||||||||||    
T  5354695 tgtaaaaagttagacaagttggaag 5354671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 25 - 235
Target Start/End: Original strand, 5433849 - 5434059
Alignment:
Q  25 ttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaagaaagttcttttga 124  Q
    |||||| | |||||||||||||||||  ||||||||| ||||||||| || || |||||| | || | ||  ||||| ||||| ||  || ||||| |||    
T  5433849 ttttcaaatttgcctaatcttgaaaagttagtactcacagattgtccaagtctttctgagatttctcctagcattggccatctcaatgaaattcttctga 5433948  T
Q  125 taaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcaggatgtttaaagattga 224  Q
    |||||||| ||||||| ||| |||| |||||||| ||||||| ||| |||| |||||| ||| ||||||||||||| ||  | || ||||||||||||||    
T  5433949 taaatttggaagattgtattggcctatgtaacctcccaagaagcatatataagttgaaatctttgaaaactctcatccttactggctgtttaaagattga 5434048  T
Q  225 caagttggaag 235  Q
    ||| |||||||    
T  5434049 caatttggaag 5434059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 5446964 - 5447181
Alignment:
Q  18 ccctgatttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaagaaagtt 117  Q
    |||||| |||||| ||  |||||||||| |||| ||||||||||||||||| ||   | |||||||||| || | ||  ||  ||||||| || ||| ||    
T  5446964 ccctgacttttcaaacacgcctaatcttcaaaaactagtactcaaagattgcccactgttgtctgaggtttcacctagcatcagacatctcaataaaatt 5447063  T
Q  118 cttttgataaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcaggatgtttaa 217  Q
    ||| ||||||| ||| |||| ||||||||||| |||| ||| |||| || |||||||| |||||| ||| ||||||||||| |||| || || |||||||    
T  5447064 cttctgataaacttggaagactgcattagcctatgtagcctcccaaaaagcatctataagttgaaatctttgaaaactctcgttctttctggttgtttaa 5447163  T
Q  218 agattgacaagttggaag 235  Q
    ||||||||||| ||||||    
T  5447164 agattgacaaggtggaag 5447181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 235
Target Start/End: Original strand, 5096508 - 5096732
Alignment:
Q  11 cacagacccctgatttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaa 110  Q
    |||| ||||| || ||||||||| ||||||||||||| || || ||||| ||||||||||| | | |||||||||| || | ||  |||||| |||| |     
T  5096508 cacacaccccagacttttcatacatgcctaatcttgagaagctggtacttaaagattgtccaatgttgtctgaggtttctcctagcattggaaatctcag 5096607  T
Q  111 gaaagttcttttgataaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcagga 210  Q
      || ||||| | ||| ||||| |||||||  |||||||| ||| ||||||| ||| |||||||| |||||| |||||||||||||||||||| || ||     
T  5096608 tgaaattcttctaatagatttggaagattgtgttagccttcgtagccttccaggaagcatctataagttgaaatctctgaaaactctcattctttctggg 5096707  T
Q  211 tgtttaaagattgacaagttggaag 235  Q
    ||| ||| ||||||| |||||||||    
T  5096708 tgtataatgattgacgagttggaag 5096732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 5157904 - 5157685
Alignment:
Q  16 acccctgatttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaagaaag 115  Q
    ||||| || ||||||||| ||||||||||||| || || ||||||||||||||||| | | |||||||||| || | ||  |||||| |||| |   ||     
T  5157904 accccagacttttcatacatgcctaatcttgagaagctggtactcaaagattgtccaatgttgtctgaggtttctcctagcattggaaatctcagtgaaa 5157805  T
Q  116 ttcttttgataaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcaggatgttt 215  Q
    ||||| | ||| ||||| |||||||  |||||||| | | ||||||||||| |||||||| |||||| |||||||||| | | ||||| ||||| ||| |    
T  5157804 ttcttctaatagatttggaagattgtgttagccttcgaagccttccaagaagcatctataagttgaaatctctgaaaattttaattctttcagggtgtat 5157705  T
Q  216 aaagattgacaagttggaag 235  Q
    || |||||||||||||||||    
T  5157704 aatgattgacaagttggaag 5157685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 235
Target Start/End: Original strand, 5350208 - 5350418
Alignment:
Q  25 ttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaagaaagttcttttga 124  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||| | | |||| ||||| || | ||  |||||| |||| |   || ||||| | |    
T  5350208 ttttcatacatgcctaatcttgaaaagctagtactcaaagattgtccaatgttgtccgaggtttctcctagcattggagatctcagtgaaattcttctaa 5350307  T
Q  125 taaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcaggatgtttaaagattga 224  Q
    || ||||| | |||||  ||||||||   | ||||||||||| ||||| || |||||| ||||| |||||||||||||| ||||| ||| ||| ||||||    
T  5350308 tagatttggaggattgtgttagccttcaaagccttccaagaagcatctttaagttgaaatctctcaaaactctcattctttcagggtgtataatgattga 5350407  T
Q  225 caagttggaag 235  Q
    |||||||||||    
T  5350408 caagttggaag 5350418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 5284663 - 5284446
Alignment:
Q  18 ccctgatttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaagaaagtt 117  Q
    |||||| |||||  || |||||||||||||||| ||||| |||||||||||||| ||||| |||||||| || | ||  |||||| |||| || ||| ||    
T  5284663 ccctgacttttcgaacatgcctaatcttgaaaagctagtgctcaaagattgtccaaggctatctgaggtttcacctagcattggaaatctcaataaaatt 5284564  T
Q  118 cttttgataaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcaggatgtttaa 217  Q
      ||||||||||||  ||| ||| |||||| | |||| ||| ||| ||| |||||||| |||||| ||||| |||||| ||||||| |  || |||| ||    
T  5284563 gctttgataaattttgaaggttgtattagcttatgtagcctcccacgaagcatctataagttgaaatctctaaaaactttcattctttttgggtgttcaa 5284464  T
Q  218 agattgacaagttggaag 235  Q
     |||||||||||||||||    
T  5284463 tgattgacaagttggaag 5284446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 5425715 - 5425934
Alignment:
Q  16 acccctgatttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatctta-agaaa 114  Q
    |||||||| ||| ||| | |||||||||||||||| || || |||||||||||||| | | |||||||| | || | ||  |||||| |||| | |||||    
T  5425715 acccctgactttacattcatgcctaatcttgaaaagctggtgctcaaagattgtccaatgttgtctgagatttctcctagcattggaaatctcagagaaa 5425814  T
Q  115 gttcttttgataaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcaggatgtt 214  Q
     ||||| | ||||||||  |||||||  || |||||   | |||||||||||||||||||| |||||| |||||||||||||||||||| || || |||     
T  5425815 -ttcttctaataaatttagaagattgtgttcgccttcaaagccttccaagaaacatctataagttgaaatctctgaaaactctcattctttctgggtgtg 5425913  T
Q  215 taaagattgacaagttggaag 235  Q
    ||| |||||||||||||||||    
T  5425914 taatgattgacaagttggaag 5425934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 235
Target Start/End: Original strand, 5176542 - 5176763
Alignment:
Q  14 agacccctgatttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaagaa 113  Q
    ||||||| || |||||| || |||||||||||||||| ||  |||||| |||||| || ||| ||  |||||| |||||||  |||||||||||  | ||    
T  5176542 agaccccagacttttcaaacatgcctaatcttgaaaagcttatactcatagattgcccaaggttgcgtgaggtttcccatagcattggacatctcgataa 5176641  T
Q  114 agttcttttgataaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcaggatgt 213  Q
    | ||||| ||||||| ||| ||||||| |||||||||   |  ||||||||||  ||||||| |||||| ||| ||||||| |||||||| || || |||    
T  5176642 aattcttctgataaacttggaagattgtattagccttcagagtcttccaagaagtatctataagttgaaatctttgaaaacactcattctttctgggtgt 5176741  T
Q  214 ttaaagattgacaagttggaag 235  Q
    |  | |||||||||||||||||    
T  5176742 tcgatgattgacaagttggaag 5176763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 5257608 - 5257391
Alignment:
Q  18 ccctgatttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaagaaagtt 117  Q
    |||||| |||||  || ||||||||||||||||  ||||||||||||||||||| | ||| |||  ||| ||    |  |||||| |||| |||||| ||    
T  5257608 ccctgacttttccaacatgcctaatcttgaaaagttagtactcaaagattgtccaatgctatctagggtttcttcaagcattggaaatctcaagaaaatt 5257509  T
Q  118 cttttgataaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcaggatgtttaa 217  Q
     |||||||||||||| ||||||| |||||| | ||  | || ||||||| |||||||| |||||| ||||| |||||| ||||||| || || |||| ||    
T  5257508 gttttgataaatttggaagattgtattagcttatgcgaactcccaagaagcatctataagttgaaatctctaaaaactttcattctttctgggtgttcaa 5257409  T
Q  218 agattgacaagttggaag 235  Q
     |||||||||||||||||    
T  5257408 tgattgacaagttggaag 5257391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 5370376 - 5370595
Alignment:
Q  16 acccctgatttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaagaaag 115  Q
    ||||| || ||||||||||||||||| ||||||||  ||||||||||||||||| | | |||||||||||| || | ||  |||||  ||||     ||     
T  5370376 accccagacttttcatacttgcctaagcttgaaaagttagtactcaaagattgttcaatgctgtctgaggtttctcctagcattgggaatctcggcgaaa 5370475  T
Q  116 ttcttttgataaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcaggatgttt 215  Q
    ||||| | ||| ||||  |||||||  |||||||| ||||||||||||||| ||| |||| |||||| ||||| || ||||| ||||| ||||| ||| |    
T  5370476 ttcttctaatagattttgaagattgtgttagccttcgtaaccttccaagaagcatttataagttgaaatctctaaagactcttattctttcagggtgtgt 5370575  T
Q  216 aaagattgacaagttggaag 235  Q
    || |||||| ||||||||||    
T  5370576 aatgattgagaagttggaag 5370595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 235
Target Start/End: Original strand, 5278369 - 5278590
Alignment:
Q  14 agacccctgatttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaagaa 113  Q
    ||||||| || |||||| || |||||||||||||||| ||  |||||| |||||| || ||| ||| |||||| || ||||  |||||| ||||  | ||    
T  5278369 agaccccagacttttcaaacatgcctaatcttgaaaagcttatactcatagattgcccaaggttgtgtgaggtttctcatagcattggatatctcgataa 5278468  T
Q  114 agttcttttgataaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcaggatgt 213  Q
    | ||||| ||||||| ||| ||||||| |||||||||   |  ||||||||||  ||||||| |||||| ||| ||||||| |||||||| || || |||    
T  5278469 aattcttctgataaacttggaagattgtattagccttcagagtcttccaagaagtatctataagttgaaatctttgaaaacactcattctttctgggtgt 5278568  T
Q  214 ttaaagattgacaagttggaag 235  Q
    |  | |||||||||||||||||    
T  5278569 tcgatgattgacaagttggaag 5278590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 5244143 - 5243924
Alignment:
Q  16 acccctgatttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaagaaag 115  Q
    ||||| || ||||||||| || | ||||||||||| |||||||||||||||||| |   | |||| ||| | || | ||  |||||  |||| |   ||     
T  5244143 accccagacttttcatacatgtcaaatcttgaaaagctagtactcaaagattgttcagtgttgtccgagatttctcctagcattgggaatctcagtgaaa 5244044  T
Q  116 ttcttttgataaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcaggatgttt 215  Q
    ||||| | ||| ||||| |||||||  |||||||| | | ||||||||||| |||||||| |||||| |||||||||||| ||||||| ||||| ||| |    
T  5244043 ttcttctaatagatttggaagattgtgttagccttcgaagccttccaagaagcatctataagttgaaatctctgaaaactttcattctctcagggtgtat 5243944  T
Q  216 aaagattgacaagttggaag 235  Q
    || |||||| ||||||||||    
T  5243943 aatgattgagaagttggaag 5243924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 5147177 - 5147038
Alignment:
Q  11 cacagacccctgatttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaa 110  Q
    ||||||||||  | |||| | ||||||||||||||||| | |||||||||   |||||||| | | ||||||| || || ||||  |||||| |||| ||    
T  5147177 cacagaccccaaactttttaaacttgcctaatcttgaacaactagtactctctgattgtccaatgttgtctgaagtttctcatagtattggatatctcaa 5147078  T
Q  111 gaaagttcttttgataaatttgaaagattgcattagcctt 150  Q
     ||| ||||| ||||||||||| ||||||| | |||||||    
T  5147077 taaaattcttctgataaatttggaagattgtactagcctt 5147038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 32 - 233
Target Start/End: Original strand, 8877430 - 8877631
Alignment:
Q  32 acttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaagaaagttcttttgataaattt 131  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||   ||| | || ||||| || |||| ||| || ||||||||||||||||||||    
T  8877430 acttgcctaatcttgaaaagctagtactcaaagattgtccgaggttgatagagatttcgcatactataggacttctgaataaagttcttttgataaattt 8877529  T
Q  132 gaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcaggatgtttaaagattgacaagttg 231  Q
    | ||||||| ||||||||| | | |||||||||||  || || | |||||| ||||| ||| |||||||||| || || |||| || |||||||||||||    
T  8877530 ggaagattgtattagccttcggagccttccaagaagtatatacaagttgaaatctctaaaatctctcattctttctgggtgttcaatgattgacaagttg 8877629  T
Q  232 ga 233  Q
    ||    
T  8877630 ga 8877631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 9176 - 8957
Alignment:
Q  16 acccctgatttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaagaaag 115  Q
    ||||| || |||||||| ||||||||||||||||| |||||||||||||||||||| | | || | ||||| || ||||| |||||| ||||     ||     
T  9176 accccagacttttcatatttgcctaatcttgaaaagctagtactcaaagattgtccaatgttgaccgaggtttctcataccattggagatctcggtgaaa 9077  T
Q  116 ttcttttgataaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcaggatgttt 215  Q
    | ||| | ||| ||||| |||||||  |||||||| ||| ||||||||||| |||||||| |||||| |||||||||||||||||||| || || ||| |    
T  9076 tacttctaatagatttggaagattgtgttagccttcgtagccttccaagaagcatctataagttgaaatctctgaaaactctcattctttctgggtgtat 8977  T
Q  216 aaagattgacaagttggaag 235  Q
    || |||||||||||||||||    
T  8976 aatgattgacaagttggaag 8957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 235
Target Start/End: Complemental strand, 36214099 - 36213886
Alignment:
Q  22 gatttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaagaaagttcttt 121  Q
    ||||||||| || ||||||| |||||||| |||||||||| ||||||||| ||  |||||||||| ||||| |  ||||||||||| || |||||||||     
T  36214099 gatttttcaaacatgcctaaccttgaaaaactagtactcacagattgtccaagattgtctgaggtttcccacagtattggacatctcaataaagttcttc 36214000  T
Q  122 tgataaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcaggatgtttaaagat 221  Q
    | ||||||||| ||||||| |||||||||   | |||||| | |   ||||||| ||| || |  || |||||||||||||| || ||||||| ||||||    
T  36213999 taataaatttggaagattgtattagccttcaaagccttcctaaaggtatctataagttaaaattacttaaaactctcattctttctggatgttcaaagat 36213900  T
Q  222 tgacaagttggaag 235  Q
    |||||| |||||||    
T  36213899 tgacaaattggaag 36213886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 235
Target Start/End: Complemental strand, 34724853 - 34724643
Alignment:
Q  25 ttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaagaaagttcttttga 124  Q
    |||||||||||||| |||||||||||  || |||||||||||||||| |   ||||    || || | ||  || ||| |||| |||||| |||| ||||    
T  34724853 ttttcatacttgccaaatcttgaaaagttaatactcaaagattgtccaaatttgtcctcagtttctcctaatataggaaatctcaagaaaattctattga 34724754  T
Q  125 taaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcaggatgtttaaagattga 224  Q
    ||||||||||||| || |   |||||||| | |||||||||| ||||||||  ||||||||  | |||||||||||| | || ||||||  ||| |||||    
T  34724753 taaatttgaaagactgtacaggcctttgtgagcttccaagaagcatctataaattgaagtcagtaaaaactctcattgtgtctggatgtacaaaaattga 34724654  T
Q  225 caagttggaag 235  Q
    |||||||||||    
T  34724653 caagttggaag 34724643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 235
Target Start/End: Original strand, 18935200 - 18935410
Alignment:
Q  25 ttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaagaaagttcttttga 124  Q
    |||||| ||||||| |||||||||||  || ||||||||||||| || ||  ||||   ||| || ||||  || |||| ||| |||||| ||||||| |    
T  18935200 ttttcaaacttgccgaatcttgaaaagttaatactcaaagattgcccaagtttgtcctcggtttctcatagtataggacttctcaagaaaattcttttaa 18935299  T
Q  125 taaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcaggatgtttaaagattga 224  Q
    ||||||||||||| || |   |||||||| | |||||||||| ||||||||  ||  ||||  | ||| |||||||| |||| ||||||  ||| |||||    
T  18935300 taaatttgaaagactgtacaggcctttgtgaacttccaagaagcatctataaattagagtcggtcaaagctctcattttatctggatgtacaaaaattga 18935399  T
Q  225 caagttggaag 235  Q
    |||||||||||    
T  18935400 caagttggaag 18935410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 235
Target Start/End: Complemental strand, 47987119 - 47986909
Alignment:
Q  25 ttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaagaaagttcttttga 124  Q
    |||||| || |||||||||| ||||| ||||||||||||||||| || | | | |||||| | || | ||  |||||||||||  | ||| ||||| |||    
T  47987119 ttttcaaacatgcctaatctcgaaaagctagtactcaaagattgcccaatgttatctgagatttctcctagcattggacatctcgacaaaattcttctga 47987020  T
Q  125 taaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcaggatgtttaaagattga 224  Q
    |||||||| |||| || |||||||| |||| ||| ||||||| ||  || |  || || ||||| |||||||||||||| || || |||||||||||| |    
T  47987019 taaatttggaagactgtattagcctatgtagcctcccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaa 47986920  T
Q  225 caagttggaag 235  Q
    |||||||||||    
T  47986919 caagttggaag 47986909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 235
Target Start/End: Complemental strand, 47996406 - 47996196
Alignment:
Q  25 ttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaagaaagttcttttga 124  Q
    |||||| || |||||||||| ||||| ||||||||||||||||| || | | | |||||| | || | ||  |||||||||||  | ||| ||||| |||    
T  47996406 ttttcaaacatgcctaatctcgaaaagctagtactcaaagattgcccaatgttatctgagatttctcctagcattggacatctcgacaaaattcttctga 47996307  T
Q  125 taaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcaggatgtttaaagattga 224  Q
    |||||||| |||| || |||||||| |||| ||| ||||||| ||  || |  || || ||||| |||||||||||||| || || |||||||||||| |    
T  47996306 taaatttggaagactgtattagcctatgtagcctcccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaa 47996207  T
Q  225 caagttggaag 235  Q
    |||||||||||    
T  47996206 caagttggaag 47996196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 235
Target Start/End: Complemental strand, 48005693 - 48005483
Alignment:
Q  25 ttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaagaaagttcttttga 124  Q
    |||||| || |||||||||| ||||| ||||||||||||||||| || | | | |||||| | || | ||  |||||||||||  | ||| ||||| |||    
T  48005693 ttttcaaacatgcctaatctcgaaaagctagtactcaaagattgcccaatgttatctgagatttctcctagcattggacatctcgacaaaattcttctga 48005594  T
Q  125 taaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcaggatgtttaaagattga 224  Q
    |||||||| |||| || |||||||| |||| ||| ||||||| ||  || |  || || ||||| |||||||||||||| || || |||||||||||| |    
T  48005593 taaatttggaagactgtattagcctatgtagcctcccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaa 48005494  T
Q  225 caagttggaag 235  Q
    |||||||||||    
T  48005493 caagttggaag 48005483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 235
Target Start/End: Complemental strand, 48014978 - 48014768
Alignment:
Q  25 ttttcatacttgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaagaaagttcttttga 124  Q
    |||||| || |||||||||| ||||| ||||||||||||||||| || | | | |||||| | || | ||  |||||||||||  | ||| ||||| |||    
T  48014978 ttttcaaacatgcctaatctcgaaaagctagtactcaaagattgcccaatgttatctgagatttctcctagcattggacatctcgacaaaattcttctga 48014879  T
Q  125 taaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcaggatgtttaaagattga 224  Q
    |||||||| |||| || |||||||| |||| ||| ||||||| ||  || |  || || ||||| |||||||||||||| || || |||||||||||| |    
T  48014878 taaatttggaagactgtattagcctatgtagcctcccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaa 48014779  T
Q  225 caagttggaag 235  Q
    |||||||||||    
T  48014778 caagttggaag 48014768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 203
Target Start/End: Complemental strand, 22584392 - 22584303
Alignment:
Q  114 agttcttttgataaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattct 203  Q
    ||||||| | ||||||||| |||| ||  | |||||||||| ||| |||||||||||||| | |||||| ||| ||||||||||||||||    
T  22584392 agttcttctaataaatttgcaagactgtttaagcctttgtagcctcccaagaaacatctacaagttgaaatctttgaaaactctcattct 22584303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0813 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0813
Description:

Target: scaffold0813; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 5102 - 5047
Alignment:
Q  16 acccctgatttttcatacttgcctaatcttgaaaacctagtactcaaagattgtcc 71  Q
    ||||| || ||||||| | |||||||||||||||| |||||||||||||| |||||    
T  5102 accccagacttttcattcatgcctaatcttgaaaagctagtactcaaagactgtcc 5047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0552 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 8561 - 8506
Alignment:
Q  16 acccctgatttttcatacttgcctaatcttgaaaacctagtactcaaagattgtcc 71  Q
    ||||| || ||| |||||||||| ||||||||||| |||||||||||| |||||||    
T  8561 accccagactttacatacttgccaaatcttgaaaagctagtactcaaaaattgtcc 8506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 6464 - 6519
Alignment:
Q  16 acccctgatttttcatacttgcctaatcttgaaaacctagtactcaaagattgtcc 71  Q
    ||||| || ||||||| | |||||||||||||||| |||||||||||||| |||||    
T  6464 accccagacttttcattcatgcctaatcttgaaaagctagtactcaaagactgtcc 6519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 131
Target Start/End: Original strand, 9514 - 9610
Alignment:
Q  35 tgcctaatcttgaaaacctagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaagaaagttcttttgataaattt 131  Q
    |||| ||||||||||| |||||||||||||| ||||| ||  |||||| ||| |||||||  ||||||  |||  | ||| ||||| ||||||||||    
T  9514 tgccgaatcttgaaaagctagtactcaaagactgtccaagtttgtctgcggtctcccatagcattggatctctccataaacttcttctgataaattt 9610  T

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