View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2802_high_5 (Length: 258)
Name: NF2802_high_5
Description: NF2802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2802_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 6 - 242
Target Start/End: Complemental strand, 18221491 - 18221255
Alignment:
| Q |
6 |
caaaggggagcaaaaagtatctctaaggtatccaagcctcaaatctcttagcactcactttaacgatcaaagctttggaaagccagaggggaagaaaatc |
105 |
Q |
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| T |
18221491 |
caaaggggagcaaaaagtatctctaaggtatccaagcctcaaatctcttagcactcactttaacgatcaaagctttggaaagccagaggggaagaaaatc |
18221392 |
T |
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| Q |
106 |
cctacacttgacgagaaatacgtgatgggaatcgaatttgcaatcaaaacactttgtagaagcatctcagctaatgaatttgcagagaaaggaaactcat |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18221391 |
cctacacttgacgagaaatacgtgatgggaatcgaatttgcaatcaaaacactttgtagaagcatctcagctaatgaatttgcagagaaaggaaactcat |
18221292 |
T |
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| Q |
206 |
ggagcttctgggcctctcctcctaagagcccagttat |
242 |
Q |
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| T |
18221291 |
ggagcttctgggcctctcctcctaagagcccagttat |
18221255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 43013146 - 43013060
Alignment:
| Q |
6 |
caaaggggagcaaaaagtatctctaaggtatccaagcctcaaatctcttagcactcactttaacgatcaaagctttggaaagccaga |
92 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
43013146 |
caaatgggagcaggaagtatctctaaggtatccaagcctcaaatctcttagcactcactttaaagatcaatgctttggaaagccaga |
43013060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 152 - 242
Target Start/End: Complemental strand, 43013060 - 43012970
Alignment:
| Q |
152 |
aaacactttgtagaagcatctcagctaatgaatttgcagagaaaggaaactcatggagcttctgggcctctcctcctaagagcccagttat |
242 |
Q |
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||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||| || |||| ||||||||||| |||||||||||| |
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| T |
43013060 |
aaacactctgtagaagcatctcagctaacgaatttgctgagaaaggaaactcatggagtttttgggtctctcctcctatgagcccagttat |
43012970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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