View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2802_low_2 (Length: 461)
Name: NF2802_low_2
Description: NF2802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2802_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 12639795 - 12640111
Alignment:
| Q |
1 |
atctttaagtaagatctcaagttagattttattacatgaagaaaaatgatataaagaagagaatctactaacaaagattagtttttacta-tattaacaa |
99 |
Q |
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| T |
12639795 |
atctttaagtaagatctcaagttagattttattacatgaagaaaaatgattgaaagaagagaatctactaacaaagattagtttttactagtattaacaa |
12639894 |
T |
|
| Q |
100 |
aggtaatagacattttacattaataatatggttaccctaaaaaagaaaatttatagtactagtgtagtgtgtttaagctgatttcagttgcattatttta |
199 |
Q |
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| T |
12639895 |
aggtaatagacattttacattaataatatggttaccctaaaaaagaaaatttatagtactagtgtagtgtgtttaagctgatttcagttgcattatttta |
12639994 |
T |
|
| Q |
200 |
atttcttactctgtttcgttttttatgataaaaatgtattaaaagtttgacagaaaaaggactttgatttagaaaatttggtgaattaattaaaaaacaa |
299 |
Q |
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| T |
12639995 |
atttcttactctgtttcgttttttatgataaaaatgtattaaaagtttgacagaaaaaggactttgatttagaaaatttggtcaattaattaaaaaacaa |
12640094 |
T |
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| Q |
300 |
tgatattatttttaaca |
316 |
Q |
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| T |
12640095 |
tgatattatttttaaca |
12640111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 361 - 450
Target Start/End: Original strand, 12640675 - 12640761
Alignment:
| Q |
361 |
ttatgaaacacacttaattaaattctatcactttcttcttcactaacatatattttgccaataaatttttctttaattattttcagtctg |
450 |
Q |
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| T |
12640675 |
ttatgaaacacacttaattaaattctatcactttcttc---acttacatatattttgccaataaatttttctttaattattttcagtctg |
12640761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 12640145 - 12640190
Alignment:
| Q |
313 |
aacattttatttcctctcaattagacccatgtatctatgttttttc |
358 |
Q |
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| T |
12640145 |
aacattttatttcctctcaattagacccatgtatctatgttttttc |
12640190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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