View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2802_low_3 (Length: 399)
Name: NF2802_low_3
Description: NF2802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2802_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 177 - 354
Target Start/End: Original strand, 22186831 - 22187008
Alignment:
| Q |
177 |
gcatatttatactactaacacatgagcttcaagctgaaaagagtttagcttccaagaaaataagttcacatgaactttatataaatgtaacaaaataaca |
276 |
Q |
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| T |
22186831 |
gcatatatatactactaacacatgagcttcaagctgaaaagagtttagcttccaagaaaataagttcacatgaactttatataaatgtaacaaaataaca |
22186930 |
T |
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| Q |
277 |
agacaatgatttcagaaacaagacatgttgaacaaaagaagaacataagaacaagaaactttgcaccaaaaaatatac |
354 |
Q |
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| T |
22186931 |
agacaatgatttcagaaacaagacatgttgaacaaaagaagaacataagaacaagaaactttgcaccaaaaaatatac |
22187008 |
T |
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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 22186661 - 22186748
Alignment:
| Q |
1 |
atataatggttgaattttaatactttgattatggtaatttnnnnnnnnnnnnnnnntacatgtgttcaaaatcaattaacatatctaaattcag |
94 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
22186661 |
atataatggttgaattttaatactttgattatggtaattt------taaaaaaaaatacatgtgttcaaaatcaattaacatatctaaattcag |
22186748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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