View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2802_low_4 (Length: 296)
Name: NF2802_low_4
Description: NF2802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2802_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 4741990 - 4741704
Alignment:
| Q |
1 |
ggaagcacttcaattttccagtcccatggaccatacatagtgaaattgaaagtgaaagtgatgtaaacatttgaattttccttattttgaattccaaacc |
100 |
Q |
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| T |
4741990 |
ggaagcacttcagttttccaatcccatggaccatagatagtaaaattgaaagtgaaagtgatgtaaacatttgaattttcctaattttgaattccaaacc |
4741891 |
T |
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| Q |
101 |
gaatgaaacggcaaatcaatttactaaacacagcatattaacaaacaaaataagtcttttgatgatgtgacaagtttcccaataatttgttagtttaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| | ||||||| |||||||| |
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| T |
4741890 |
gaatgaaacggcaaatcaatttactaaacacagcatattaacaaacaaaagaagtcttttaatgatgtgacaagtttcccactgatttgttggtttaatt |
4741791 |
T |
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| Q |
201 |
gggtattaagttacct---agaaatagttttgatgatcacaaatgaacagtttctaactttctacttcaacatgttcttgaggtctgtg |
286 |
Q |
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| T |
4741790 |
gggaat--aattaccttaaaaatatagttttgatgatgacaaatgaacagtttctaactttctacttcaacaagtttttgaggtctgtg |
4741704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 4721162 - 4721031
Alignment:
| Q |
1 |
ggaagcacttcaattttccagtcccatggaccatacatagtgaaattgaaagtgaaagtgatgtaaacatttgaattttccttattttgaattccaaacc |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4721162 |
ggaagcacttcagttttccagtcccatggaccatacatagtgaaattgaaagtgaaagtgatgtaaacatttgaattttccttattttgaattccaaacc |
4721063 |
T |
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| Q |
101 |
gaatgaaacggcaaatcaatttactaaacaca |
132 |
Q |
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| T |
4721062 |
gaatgaaacggcaaatcaatttactaaacaca |
4721031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 213 - 283
Target Start/End: Complemental strand, 4742854 - 4742782
Alignment:
| Q |
213 |
acctagaaatagttttgatgat--cacaaatgaacagtttctaactttctacttcaacatgttcttgaggtct |
283 |
Q |
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| T |
4742854 |
acctggaaatagttttgatgatgacacaactgaataatttctaactttatacttcaacatgttcttgaggtct |
4742782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 4726262 - 4726160
Alignment:
| Q |
47 |
tgaaagtgaaagtgatgtaaacatttgaattttccttattttgaattccaaaccgaatgaaacggcaaatcaatttactaaacacagcatatt-aacaaa |
145 |
Q |
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||||||||||| || ||||||||| |||||||| | |||| ||||||||||||||||| || ||||||| ||||||||||| | ||||||| |||||| |
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| T |
4726262 |
tgaaagtgaaactgttgtaaacatctgaatttttccaatttc-aattccaaaccgaatgagacagcaaatcgatttactaaactc-gcatattaaacaaa |
4726165 |
T |
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| Q |
146 |
caaaa |
150 |
Q |
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||||| |
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| T |
4726164 |
caaaa |
4726160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 241
Target Start/End: Complemental strand, 4722450 - 4722380
Alignment:
| Q |
170 |
acaagtttcccaataatttgttagtttaattgggtattaagttacctagaaatagttttgatgatcacaaat |
241 |
Q |
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|||||||||||| ||||||||| ||||||||| ||| | |||||||| ||||||||||| ||||| |||||| |
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| T |
4722450 |
acaagtttcccactaatttgttggtttaattgagtagt-agttacctggaaatagttttaatgatgacaaat |
4722380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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