View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2802_low_6 (Length: 256)
Name: NF2802_low_6
Description: NF2802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2802_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 4 - 242
Target Start/End: Complemental strand, 12639731 - 12639493
Alignment:
| Q |
4 |
ttggtgttaaacgtgcattaaagaagtcctgagccatacgaaaactttgattcaactcaccacacatgtttgtttgactaagacaacttctaatagcatc |
103 |
Q |
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| T |
12639731 |
ttggtgttaaacgtgcattaaagaagtcctgagccatacgaaaactttgattcaactcaccacacatgtttgtttgactaagacaacttctaatagcatc |
12639632 |
T |
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| Q |
104 |
ccacttaaaagaacttctaactcttcttttcaaaaacccagaaaaatcatccaaacggtattccaaataagccctattaggttcaatcataccatgacca |
203 |
Q |
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| T |
12639631 |
ccacttaaaagaacttctaactcttcttttcaaaaacccagaaaaatcatccaaacggtattccaaataagccctattaggttcaatcataccatgacca |
12639532 |
T |
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| Q |
204 |
cgaagagtaaccatgtaaacaaaaataaccaaacaaact |
242 |
Q |
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| T |
12639531 |
cgaagagtaaccatgtaaacaaaaataaccaaacaaact |
12639493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 27778548 - 27778475
Alignment:
| Q |
18 |
gcattaaagaagtcctgagccatacgaaaactttgattcaactcaccacacatgtttgtttgactaagacaact |
91 |
Q |
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| T |
27778548 |
gcattaaagaaatcttgagcaattctataactttgattcaactcagcacacatatttgatgaactaagacaact |
27778475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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