View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2802_low_8 (Length: 221)
Name: NF2802_low_8
Description: NF2802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2802_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 104; Significance: 5e-52; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 52 - 183
Target Start/End: Complemental strand, 51942137 - 51942007
Alignment:
| Q |
52 |
atgctgagcacatcttgcagggacaatagcgaaaagacgatgttgttttctgattgttttgagaacaaatgtttggcgattctgagggaaactcgtgttt |
151 |
Q |
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| T |
51942137 |
atgctgagcacaacttgcagagacaatggcgaaaagacgatgttgttttctgattgttttgagaacaaatgtttggcgattctgagggaaactcgtgttt |
51942038 |
T |
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| Q |
152 |
gggttgatcatgaagagacattgttcttacga |
183 |
Q |
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| T |
51942037 |
-ggttggtcatggagagacattgttcttacga |
51942007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 153
Target Start/End: Original strand, 4582561 - 4582678
Alignment:
| Q |
36 |
agagccagcagcgatcatgctgagcacatcttgcagggacaatagcgaaaagacgatgttgttttctgattgttttgagaacaaatgtttggcgattctg |
135 |
Q |
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||||||||||||||||||||||||| || |||| || || | | | ||||| || ||||| || ||||||| ||||||||| | || ||||||||||||| |
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| T |
4582561 |
agagccagcagcgatcatgctgagcgcaacttggagcgaaagtggggaaaacacaatgttcttctctgattcttttgagaagagatatttggcgattctg |
4582660 |
T |
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| Q |
136 |
agggaaactcgtgtttgg |
153 |
Q |
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| T |
4582661 |
agggaaacttttgtttgg |
4582678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 5155354 - 5155224
Alignment:
| Q |
1 |
aggaagtctagaagttgctgccgtgtgggaccataagagccagcagcgatcatgctgagcacatcttgcagggacaatagcgaaaagacgatgttgtttt |
100 |
Q |
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| T |
5155354 |
aggaagtcgagaagctgttgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaacacaatgttcttgt |
5155255 |
T |
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| Q |
101 |
ctgattgttttgagaacaaatgtttggcgat |
131 |
Q |
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|| ||| ||| |||||| |||||||||||| |
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| T |
5155254 |
ctaattctttcaagaacagatgtttggcgat |
5155224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 4614280 - 4614333
Alignment:
| Q |
91 |
atgttgttttctgattgttttgagaacaaatgtttggcgattctgagggaaact |
144 |
Q |
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||||| || ||||||| ||||||||| | ||||||||||||||||||||||||| |
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| T |
4614280 |
atgttcttctctgattcttttgagaaaagatgtttggcgattctgagggaaact |
4614333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 36 - 144
Target Start/End: Original strand, 9677699 - 9677807
Alignment:
| Q |
36 |
agagccagcagcgatcatgctgagcacatcttgcagggacaatagcgaaaagacgatgttgttttctgattgttttgagaacaaatgtttggcgattctg |
135 |
Q |
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||||||||||||||| || ||||| ||| |||| || |||||| | |||||||||| |||||| ||||||| ||||||||| | ||||||||||| || |
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| T |
9677699 |
agagccagcagcgatgatactgagaacaacttggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgtttggcgaccgtg |
9677798 |
T |
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| Q |
136 |
agggaaact |
144 |
Q |
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||||||||| |
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| T |
9677799 |
agggaaact |
9677807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 142
Target Start/End: Original strand, 9693440 - 9693546
Alignment:
| Q |
36 |
agagccagcagcgatcatgctgagcacatcttgcagggacaatagcgaaaagacgatgttgttttctgattgttttgagaacaaatgtttggcgattctg |
135 |
Q |
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||||||| ||||||| |||||||| ||| |||| || |||||| | |||||||||| || || ||||||| ||||||||| | |||||||||||| || |
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| T |
9693440 |
agagccaacagcgatgatgctgagaacaacttggagagacaatggtgaaaagacgacattcttgtctgattcttttgagaagagatgtttggcgatggtg |
9693539 |
T |
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| Q |
136 |
agggaaa |
142 |
Q |
| |
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||||||| |
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| T |
9693540 |
agggaaa |
9693546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 126
Target Start/End: Complemental strand, 35160570 - 35160480
Alignment:
| Q |
36 |
agagccagcagcgatcatgctgagcacatcttgcagggacaatagcgaaaagacgatgttgttttctgattgttttgagaacaaatgtttg |
126 |
Q |
| |
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||||||||||| ||| |||||||||||| |||| || |||||| ||||||| |||||||| |||||||||| ||| ||||| | ||||||| |
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| T |
35160570 |
agagccagcagtgattatgctgagcacaacttggagagacaatggcgaaaacacgatgttcttttctgattctttggagaagagatgtttg |
35160480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 35154214 - 35154071
Alignment:
| Q |
1 |
aggaagtctagaagttgctgccgtgtgggaccataagagccagcagcgatcatgctgagcacatcttgcagggacaatagcgaaaagacgatgttgtttt |
100 |
Q |
| |
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||||||| ||||| || || ||||||| ||| | ||||||||||||||| || ||||| |||| || ||||| ||||||| ||||| || |||| |
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| T |
35154214 |
aggaagttgagaagctgttgtcgtgtggaaccgtcagagccagcagcgatgattgcaagcactacttggagagacaaaggcgaaaacacgatattctttt |
35154115 |
T |
|
| Q |
101 |
ctgattgttttgagaacaaatgtttggcgattctgagggaaact |
144 |
Q |
| |
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|||||| |||||||| | |||||||||||| ||||||||||| |
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| T |
35154114 |
ctgattcctttgagaaaagatgtttggcgatagtgagggaaact |
35154071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 15555156 - 15555098
Alignment:
| Q |
1 |
aggaagtctagaagttgctgccgtgtgggaccataagagccagcagcgatcatgctgag |
59 |
Q |
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|||||||| |||||||| ||| |||||| ||| | ||||||||||||||| |||||||| |
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| T |
15555156 |
aggaagtcgagaagttgttgctgtgtggaaccctcagagccagcagcgatgatgctgag |
15555098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 131
Target Start/End: Complemental strand, 20154488 - 20154380
Alignment:
| Q |
23 |
gtgtgggaccataagagccagcagcgatcatgctgagcacatcttgcagggacaatagcgaaaagacgatgttgttttctgattgttttgagaacaaatg |
122 |
Q |
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|||||||||| | ||||||||||||| | | ||||| |||| |||| || |||| | ||||||| || ||||| || ||||||||||| |||||| ||| |
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| T |
20154488 |
gtgtgggaccttcagagccagcagcggtgaggctgaacacaacttggagtgacactggcgaaaacacaatgttcttgtctgattgtttcaagaacagatg |
20154389 |
T |
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| Q |
123 |
tttggcgat |
131 |
Q |
| |
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||||||||| |
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| T |
20154388 |
tttggcgat |
20154380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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