View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2803_high_3 (Length: 241)
Name: NF2803_high_3
Description: NF2803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2803_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 37280416 - 37280640
Alignment:
| Q |
1 |
cataagcatttctagcnnnnnnnctaactataaccatatattgttgatgtatacttccataaatagttgaaatgtgaggtgtaagagtgtttgataccaa |
100 |
Q |
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| T |
37280416 |
cataagcatttctagcaaaaaaactaactataaccatatattgttgatgtatacttccataaatagttaaaatgtgaggtgtaagagtgtttgataccaa |
37280515 |
T |
|
| Q |
101 |
tgattttcctcatgttttggaatacctttgaactgtaataattttatgtatattatgaaccctttcctacgaatactccaacccaccaacattcctttat |
200 |
Q |
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| T |
37280516 |
tgattttcctcatgttttggaatacctttgaactgtaataattttatgtatattatgaaccctttcctacgaatactccaacccaccaacattcctttat |
37280615 |
T |
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| Q |
201 |
aacatcaacaacagcgtaaacaaaa |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
37280616 |
aacatcaacaacagcgtaaacaaaa |
37280640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 76 - 225
Target Start/End: Original strand, 37276671 - 37276820
Alignment:
| Q |
76 |
gaggtgtaagagtgtttgataccaatgattttcctcatgttttggaatacctttgaactgtaataattttatgtatattatgaaccctttcctacgaata |
175 |
Q |
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||||||||||| ||||||||||||| || |||||||| || ||||| |||||||||| | ||||||||||||||||||| || | |||||||||| || |
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| T |
37276671 |
gaggtgtaagaatgtttgataccaacgactttcctcacacttcggaatccctttgaactattataattttatgtatattatcaatcatttcctacgacta |
37276770 |
T |
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| Q |
176 |
ctccaacccaccaacattcctttataacatcaacaacagcgtaaacaaaa |
225 |
Q |
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| T |
37276771 |
ctccaatccaccaacatttctttataacatcaacagcaacgtaaacaaaa |
37276820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 37264817 - 37264859
Alignment:
| Q |
183 |
ccaccaacattcctttataacatcaacaacagcgtaaacaaaa |
225 |
Q |
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| T |
37264817 |
ccaccaacattcctttataacatcaacaacaatgtaaacaaaa |
37264859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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