View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2803_low_1 (Length: 370)
Name: NF2803_low_1
Description: NF2803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2803_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 17 - 355
Target Start/End: Complemental strand, 35905735 - 35905397
Alignment:
| Q |
17 |
atgttattggttggacaggcggtaaaggagtgcctacttataaggattatgtgatttatgttcaagatcaggcaggtgatgatcaactttggcttgcatt |
116 |
Q |
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| T |
35905735 |
atgttattggttggacaggcagtaaaggagtgcctacttataaggattatgtgatttatgttcaagatcaggcaggtgatgatcaactttggcttgcatt |
35905636 |
T |
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| Q |
117 |
gcatccatcgcccgattcaaagccggaatattatgatgctatactcaatggtgttgagatattcaaactcaatgatactgatttgtctggaccaaatcct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35905635 |
gcatccatcgcccgattcaaagccggaatattatgatgctatactcaatggtgttgagatattcaaactcaatgatactgatttgtctggaccaaatcct |
35905536 |
T |
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| Q |
217 |
caaccttctgatatgatgattgaacatgacaatcaggnnnnnnnnnnnnnnnnnnnnnnnnntggtcataataagagttttgttattggtggtgctgccg |
316 |
Q |
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| T |
35905535 |
caaccttctgatatgatgattgaacatgacaatcaggaaaaaacttttcaaaacaaaaaaaatggtcataataagagttttgttattggtggtgctgccg |
35905436 |
T |
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| Q |
317 |
gtggtgcggcaggttttgcaattgttgctgctatatgtg |
355 |
Q |
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| T |
35905435 |
gtggtgcggcaggttttgcaattgttgctgctatatgtg |
35905397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 47623696 - 47623900
Alignment:
| Q |
20 |
ttattggttggacaggcggtaaaggagtgcctacttataaggattatgtgatttatgttcaagatcaggcaggtgatgatcaactttggcttgcattgca |
119 |
Q |
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| T |
47623696 |
ttattgggtggacaggaggtaaaggcatgacaacttaccaggactatgtggtatatgtccaagacggggagggggatgagcaactttggcttgcactaca |
47623795 |
T |
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| Q |
120 |
tccatcgcccgattcaaagccggaatattatgatgctatactcaatggtgttgagatattcaaactcaatgatactgatttgtctggaccaaatcctcaa |
219 |
Q |
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|||| | || || ||||| || | | |||||||||||||||||||| || ||||||||||| |||||||| || || |||||||| || |||||||| |
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| T |
47623796 |
tccagcacctgactcaaaaccacagttctatgatgctatactcaatggggtggagatattcaagctcaatgacacggacttgtctggccccaatcctcag |
47623895 |
T |
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| Q |
220 |
ccttc |
224 |
Q |
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||||| |
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| T |
47623896 |
ccttc |
47623900 |
T |
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