View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2803_low_2 (Length: 299)
Name: NF2803_low_2
Description: NF2803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2803_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 34316389 - 34316660
Alignment:
| Q |
18 |
attatttgcttaagcctataaggatgaaagaagtgcgaaacatatggcaacatgtcttaagaaaaagaatacgtgaggcaagagaatttgaaagtcttga |
117 |
Q |
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| T |
34316389 |
attatttgcttaagcctataaggatgaaagaagtgcgaaacatatggcaacatgtcttaagaaaaagaatacgtgaggcaagagaatttgaaagtcttga |
34316488 |
T |
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| Q |
118 |
gggaattcacttaatgaggaatggatcagatcacactgatgatggtaacctgtttgctgtaggaaaagaaatgaacttaatgaagaaaaggaaagatttt |
217 |
Q |
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| T |
34316489 |
gggaattcacttaatgaggaatggatcagatcacactgatgatggtaacctgtttgctgtaggaaaagaaatgaacttaatgaagaaaaggaaagatttt |
34316588 |
T |
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| Q |
218 |
gatagtaaacatgatgaccaagtattcttagatcaaactttcataaagaaagctagagtagtttggtctgtg |
289 |
Q |
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| T |
34316589 |
gatagtaaacatgatgaccaagtattcttagatcaaactttcataaagaaagctagagtagtttggtctgtg |
34316660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 289
Target Start/End: Original strand, 34321968 - 34322010
Alignment:
| Q |
247 |
agatcaaactttcataaagaaagctagagtagtttggtctgtg |
289 |
Q |
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| T |
34321968 |
agatcaaacttccataaagaaagctagagtagtttggtatgtg |
34322010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 38953138 - 38953054
Alignment:
| Q |
26 |
cttaagcctataaggatgaaagaagtgcgaaacatatggcaacatgtcttaagaaaaagaatacgtgaggcaagagaatttgaaa |
110 |
Q |
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| T |
38953138 |
cttaagcccataaggatgaaagagttgcgaaatatatggcaacatgtcttcagaaaaaggatacacgaggttagagaatttgaaa |
38953054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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