View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2804_high_11 (Length: 255)
Name: NF2804_high_11
Description: NF2804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2804_high_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 37457763 - 37457519
Alignment:
| Q |
1 |
ttatatcattatcttctacaccacttcttgccgcacctcatttggaagcggtaccgacttcactagtcctagccatttctttgtgctcacagtcagccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37457763 |
ttatatcattatcttctacaccacttcttgccgcacctcatttggaagcggtaccgacttcactagtcctagccatttctttgtgctcacagtcagccat |
37457664 |
T |
|
| Q |
101 |
ggaatactgatccttttctttaaagtagaaggaactgacgtaaagcattaacacaaacaaataagttaaataaataaccttgagtcataatttggtcatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37457663 |
ggaatactgatccttttctttaaagtagaaggaactgacgtaaagcattaacacaaacaaataagttaaataaataaccttgagtcataatttggtcatg |
37457564 |
T |
|
| Q |
201 |
taattttcatcagtgtgcaaatgtcttgacctcatttggtctgtg |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37457563 |
taattttcatcagtgtgcaaatgtcttgacctcatttggtctgtg |
37457519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University