View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2804_high_6 (Length: 328)
Name: NF2804_high_6
Description: NF2804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2804_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 20 - 315
Target Start/End: Original strand, 15585806 - 15586100
Alignment:
| Q |
20 |
ctcgtgcattacacagatttcgccacaaatgccaaataggtgtggatagaacaacgtgcaccacttagagaaggaggttaaaccctaggtaaaaaaccac |
119 |
Q |
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| T |
15585806 |
ctcgtgaattacaccgatttcgccacaaatgccaaataggagtggatagaacaacgcgcaccacttgaagaaggaggttaaaccctaggtaaaaaaccac |
15585905 |
T |
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| Q |
120 |
agaatttcactgcatggtgtaatggcacagatnnnnnnntctctattcagtacaaactttcagtttcaacaggggaattccaacatacgctttggtaaga |
219 |
Q |
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| T |
15585906 |
agaatttcactgcatggtgtaatggcacagataaaaaaatctctattcagtgcaaactttcagtttcaacaggggaattccaacatacgctttggtaaga |
15586005 |
T |
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| Q |
220 |
ttatagatttgatactaatgaaaatactgcaaaatctgacctgagattaaatatacggcagccatgtccgattgttggaatgtacaggctctccct |
315 |
Q |
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| T |
15586006 |
ttatagatttgatactaatgaaaatactgc-aaatctgatctgagattaaatatacagcaaccatgtccgattgttggaatgtacaggctctccct |
15586100 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 14067828 - 14067783
Alignment:
| Q |
183 |
tttcaacaggggaattccaacatacgctttggtaagattatagatt |
228 |
Q |
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| T |
14067828 |
tttcaataggggaatccaaacatacgcattggtaagattatagatt |
14067783 |
T |
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