View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2804_low_1 (Length: 889)

Name: NF2804_low_1
Description: NF2804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2804_low_1
NF2804_low_1
[»] chr6 (5 HSPs)
chr6 (41-599)||(33651167-33651724)
chr6 (179-302)||(31130432-31130557)
chr6 (41-100)||(31130572-31130631)
chr6 (300-401)||(14272673-14272774)
chr6 (566-599)||(27613021-27613054)
[»] chr5 (4 HSPs)
chr5 (733-889)||(35576689-35576843)
chr5 (300-401)||(8365205-8365306)
chr5 (352-433)||(12822398-12822479)
chr5 (300-394)||(18751011-18751105)
[»] chr8 (5 HSPs)
chr8 (46-303)||(4363515-4363773)
chr8 (300-497)||(12657148-12657345)
chr8 (342-394)||(29415047-29415099)
chr8 (300-338)||(31014612-31014650)
chr8 (568-622)||(42619886-42619940)
[»] chr1 (5 HSPs)
chr1 (300-447)||(10825385-10825532)
chr1 (300-394)||(25534205-25534299)
chr1 (300-387)||(15857064-15857151)
chr1 (352-401)||(13202378-13202427)
chr1 (712-741)||(31428007-31428036)
[»] chr7 (4 HSPs)
chr7 (300-499)||(5779824-5780025)
chr7 (566-630)||(48145628-48145692)
chr7 (568-622)||(40854560-40854614)
chr7 (568-622)||(47954007-47954061)
[»] chr3 (6 HSPs)
chr3 (568-622)||(48353108-48353162)
chr3 (316-433)||(6878776-6878893)
chr3 (300-401)||(25781212-25781313)
chr3 (300-411)||(25779916-25780027)
chr3 (568-622)||(52714845-52714899)
chr3 (300-365)||(32466472-32466537)
[»] chr2 (4 HSPs)
chr2 (442-522)||(27748421-27748501)
chr2 (574-622)||(18737785-18737833)
chr2 (568-622)||(33616579-33616633)
chr2 (311-340)||(7706931-7706960)
[»] scaffold1122 (1 HSPs)
scaffold1122 (300-433)||(1531-1664)


Alignment Details
Target: chr6 (Bit Score: 447; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 41 - 599
Target Start/End: Complemental strand, 33651724 - 33651167
Alignment:
Q  41 ctcaatatgtttttggggtgacgtgttcaggtatataagtacacattggaggactgaggagtatttgtagctcaacatccatccatgtctcagtcagaat 140  Q
    |||| ||||||||||||||||||| | ||| |||| |||||||||||||||||||| ||||||||||||||||  |||||||||| ||||||||||||||    
T  33651724 ctcactatgtttttggggtgacgtttccagatatagaagtacacattggaggactg-ggagtatttgtagctcgtcatccatccaagtctcagtcagaat 33651626  T
Q  141 cggatcacgttaagagttagagttttaggactttgatgtcagatgttaatgtaaaatttcattttttaagttgtaaacttttcaatgaagtttttaaaga 240  Q
    || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33651625 cgaatcacgtcaagagttagagttttaggactttgatgtcagatgttaatgtaaaatttcattttttaagttgtaaacttttcaatgaagtttttaaaga 33651526  T
Q  241 gaattaaagtttctatttagaaaatatttcattcaatttttaacttaaatttggatgttacataaaagaattgaaattcttaaattgtcatctaaaggaa 340  Q
    ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||     
T  33651525 gaaataaagtttctatatagaaaatatttcattcaatttttaacttaaatttggatgttacataaaagaattgaaattcctaaattgtcatctaaaagat 33651426  T
Q  341 ttaacttcatttatgaatcttagaagttcattacatactctttcttactttagtcgttctataaatggacaaatctatctcatctaccttaccgtgagga 440  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||    
T  33651425 ttaacttcgtttatgaatcttagaagttcataacatactctttcttactttagtcgttctataaatggacaattctatctcatctaccttaccttgggga 33651326  T
Q  441 gaagaatgaaattattatgcaacgttcgaaaaagtgtgtttgctatatttctatgttcaaagataagactttggtatgtcacacaccttggttcagtgaa 540  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33651325 gaagaatgaaattattatgcaacgttcgaaaaagtgtgtttgctatatttctatgttcaaaggtaagactttggtatgtcacacaccttggttcagtgaa 33651226  T
Q  541 agccttaagacttttgttgactcaaagtgttagttgaacatctatttgtttgacaatca 599  Q
    ||||||| |||||||||||| | ||||||||| ||||||||| ||||||||||||||||    
T  33651225 agccttatgacttttgttgatttaaagtgttatttgaacatccatttgtttgacaatca 33651167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 179 - 302
Target Start/End: Complemental strand, 31130557 - 31130432
Alignment:
Q  179 tcagatgttaatgtaaaatttcatttttt-aagttgtaaacttttcaatgaagtttttaaagagaattaaagtttctatttagaaaatatttcattc-aa 276  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  31130557 tcagatattaatgtaaaatttcatttttttaagttgtaaacttttcaataaagtttttaaagagaattaaagtttctatttagaaaatatttcattcaaa 31130458  T
Q  277 tttttaacttaaatttggatgttaca 302  Q
    |||||||||||||||||| |||||||    
T  31130457 tttttaacttaaatttgggtgttaca 31130432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 31130631 - 31130572
Alignment:
Q  41 ctcaatatgtttttggggtgacgtgttcaggtatataagtacacattggaggactgagga 100  Q
    |||| ||||||||| ||||||||| | |||||||| ||||||||||| ||||||||||||    
T  31130631 ctcactatgtttttcgggtgacgtttccaggtatagaagtacacatttgaggactgagga 31130572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 300 - 401
Target Start/End: Original strand, 14272673 - 14272774
Alignment:
Q  300 acataaaagaattgaaattcttaaattgtcatctaaaggaattaacttcatttatgaatcttagaagttcattacatactctttcttactttagtcgttc 399  Q
    ||||| |||| |||| |||  |||||||||| |||||||   ||||||| ||||||||||||| | ||| |||| |||| || |||||| ||||| ||||    
T  14272673 acatagaagatttgagatttctaaattgtcaactaaaggctctaacttcgtttatgaatcttatatgtttattagataccctctcttacgttagtagttc 14272772  T
Q  400 ta 401  Q
    ||    
T  14272773 ta 14272774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 566 - 599
Target Start/End: Complemental strand, 27613054 - 27613021
Alignment:
Q  566 agtgttagttgaacatctatttgtttgacaatca 599  Q
    ||||||| ||||||||||||||||||||||||||    
T  27613054 agtgttatttgaacatctatttgtttgacaatca 27613021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 138; Significance: 1e-71; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 733 - 889
Target Start/End: Complemental strand, 35576843 - 35576689
Alignment:
Q  733 ctataaatagatccaacggctctccattaactttacacatgtgtagacgccctacaccccatagactacaaatcgaaattccattcttcaccaccacgtt 832  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  35576843 ctataaatagatccaacggctctccattaactttacacatgtgtagccgccctacacc--atagactacaaatcgaaattccattcttcaccaccacgtt 35576746  T
Q  833 tgaacacacgcgccaccaaacgcgcggggagaacattacaaccccattctccctctc 889  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35576745 taaacacacgcgccaccaaacgcgcggggagaacattacaaccccattctccctctc 35576689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 300 - 401
Target Start/End: Complemental strand, 8365306 - 8365205
Alignment:
Q  300 acataaaagaattgaaattcttaaattgtcatctaaaggaattaacttcatttatgaatcttagaagttcattacatactctttcttactttagtcgttc 399  Q
    ||||||||||||||| |||||||||||||||||||||||    |||||||| |||||||||||||||||||| ||||||| | |||||| ||||| ||||    
T  8365306 acataaaagaattgagattcttaaattgtcatctaaaggctccaacttcatctatgaatcttagaagttcatcacatactttgtcttaccttagtagttc 8365207  T
Q  400 ta 401  Q
    ||    
T  8365206 ta 8365205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 352 - 433
Target Start/End: Complemental strand, 12822479 - 12822398
Alignment:
Q  352 tatgaatcttagaagttcattacatactctttcttactttagtcgttctataaatggacaaatctatctcatctaccttacc 433  Q
    |||||||||||||||||||| || ||||||||||||||| ||| | | |||||| ||  || |||| |||||| ||||||||    
T  12822479 tatgaatcttagaagttcatcacgtactctttcttacttcagtagctttataaacgggtaactctaactcatccaccttacc 12822398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 300 - 394
Target Start/End: Original strand, 18751011 - 18751105
Alignment:
Q  300 acataaaagaattgaaattcttaaattgtcatctaaaggaattaacttcatttatgaatcttagaagttcattacatactctttcttactttagt 394  Q
    |||||||||||| |  |||  |||||| |||||||||||    |||||| | |||| ||||||||||||||| ||||||||| |||||| |||||    
T  18751011 acataaaagaatcgggatttctaaattttcatctaaaggctccaacttcgtctatgcatcttagaagttcatcacatactctctcttaccttagt 18751105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 136; Significance: 2e-70; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 46 - 303
Target Start/End: Complemental strand, 4363773 - 4363515
Alignment:
Q  46 tatgtttttggggtgacgtgttcaggtatataagtacacattggaggactgaggagtatttgtagctcaacatccatccatgtctcagtcagaatcggat 145  Q
    |||||||||||||||| || |||||||||| |||| ||||||||| || |||||||||||| ||||||  |||||||||||||||||||| |||||||||    
T  4363773 tatgtttttggggtgatgttttcaggtatagaagtgcacattggatgattgaggagtatttatagctcgtcatccatccatgtctcagtccgaatcggat 4363674  T
Q  146 cacgttaagagttagagttttaggactttgatgtcagatgttaatgtaaaatttca-ttttttaagttgtaaacttttcaatgaagtttttaaagagaat 244  Q
    |||||  ||||||||||||||||||| |||||||||  ||||| |||||||||||| |||||| ||||||||||||||| || ||||||||||||| | |    
T  4363673 cacgtcgagagttagagttttaggac-ttgatgtcatgtgttattgtaaaatttcattttttttagttgtaaacttttcgataaagtttttaaagacatt 4363575  T
Q  245 taaagtttctatttagaaaatatttcattc-aatttttaacttaaatttggatgttacat 303  Q
    ||||||| ||||| |||||||||||||||| |||| ||||| ||||||||| ||||||||    
T  4363574 taaagttcctattgagaaaatatttcattcaaattcttaacctaaatttgggtgttacat 4363515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 300 - 497
Target Start/End: Complemental strand, 12657345 - 12657148
Alignment:
Q  300 acataaaagaattgaaattcttaaattgtcatctaaaggaattaacttcatttatgaatcttagaagttcattacatactctttcttactttagtcgttc 399  Q
    ||||||||||||| |||||  ||||||||||| ||||||    |  ||| | ||||||| |||||||||||| ||||| ||| | |||| ||||| ||||    
T  12657345 acataaaagaattaaaatttctaaattgtcatttaaagggtccagattcgtctatgaattttagaagttcataacatattctctattaccttagtagttc 12657246  T
Q  400 tataaatggacaaatctatctcatctaccttaccgtgaggagaagaatgaaattattatgcaacgttcgaaaaagtgtgtttgctatatttctatgtt 497  Q
    || |||  ||||   | ||||| |||| ||||||   ||||||||||| |||||| ||||||| ||||  ||||| ||||||||| ||||||||||||    
T  12657245 tacaaacagacatcaccatctcttctagcttaccaaaaggagaagaataaaattaatatgcaatgttctgaaaagagtgtttgctctatttctatgtt 12657148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 342 - 394
Target Start/End: Original strand, 29415047 - 29415099
Alignment:
Q  342 taacttcatttatgaatcttagaagttcattacatactctttcttactttagt 394  Q
    ||||||| | |||||||||||||||| ||| |||||||||||||||| |||||    
T  29415047 taacttcgtctatgaatcttagaagtacatcacatactctttcttaccttagt 29415099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 300 - 338
Target Start/End: Original strand, 31014612 - 31014650
Alignment:
Q  300 acataaaagaattgaaattcttaaattgtcatctaaagg 338  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  31014612 acataaaagaattgaaatttctaaattgtcatctaaagg 31014650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 568 - 622
Target Start/End: Original strand, 42619886 - 42619940
Alignment:
Q  568 tgttagttgaacatctatttgtttgacaatcatatttttataatgaaaagtatgt 622  Q
    ||||| ||||||||| ||||| ||||||| |||||||||| || |||||||||||    
T  42619886 tgttatttgaacatcaatttgattgacaaccatatttttacaaagaaaagtatgt 42619940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 4e-25; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 300 - 447
Target Start/End: Original strand, 10825385 - 10825532
Alignment:
Q  300 acataaaagaattgaaattcttaaattgtcatctaaaggaattaacttcatttatgaatcttagaagttcattacatactctttcttactttagtcgttc 399  Q
    ||||||||||||||  |||| ||||||||||||||| ||  | |||||| | |||||||||||||||||||| ||| ||||| |||||| ||||| ||||    
T  10825385 acataaaagaattgggattcctaaattgtcatctaagggcttcaacttcgtctatgaatcttagaagttcataacacactctctcttaccttagtagttc 10825484  T
Q  400 tataaatggacaaatctatctcatctaccttaccgtgaggagaagaat 447  Q
    || ||| ||||||  ||||| |||||||||||||  | ||||||||||    
T  10825485 tacaaacggacaaccctatcccatctaccttaccaaggggagaagaat 10825532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 300 - 394
Target Start/End: Complemental strand, 25534299 - 25534205
Alignment:
Q  300 acataaaagaattgaaattcttaaattgtcatctaaaggaattaacttcatttatgaatcttagaagttcattacatactctttcttactttagt 394  Q
    ||||||||||||||  |||| ||||||||||||||||||   ||||||| | |||||||||||||||||||| ||||||||| | |||| |||||    
T  25534299 acataaaagaattgggattcctaaattgtcatctaaaggctctaacttcgtctatgaatcttagaagttcataacatactctctattaccttagt 25534205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 300 - 387
Target Start/End: Original strand, 15857064 - 15857151
Alignment:
Q  300 acataaaagaattgaaattcttaaattgtcatctaaaggaattaacttcatttatgaatcttagaagttcattacatactctttctta 387  Q
    ||||||||||||||| |||||||||||||||||||||||    |||||| | |||||||||||||||| ||| ||| || ||||||||    
T  15857064 acataaaagaattgagattcttaaattgtcatctaaaggctccaacttcgtctatgaatcttagaagtacatcacacaccctttctta 15857151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 13202427 - 13202378
Alignment:
Q  352 tatgaatcttagaagttcattacatactctttcttactttagtcgttcta 401  Q
    |||||||||||||||||||| ||||||||| |||||| ||| | ||||||    
T  13202427 tatgaatcttagaagttcatcacatactctctcttaccttaatagttcta 13202378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 741
Target Start/End: Original strand, 31428007 - 31428036
Alignment:
Q  712 ggttgtacaaatatcatttctctataaata 741  Q
    ||||||||||||||||||||||||||||||    
T  31428007 ggttgtacaaatatcatttctctataaata 31428036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 6e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 300 - 499
Target Start/End: Original strand, 5779824 - 5780025
Alignment:
Q  300 acataaaagaattgaaattcttaaattgtcatctaaaggaattaacttcatttatgaatcttagaagttcattaca--tactctttcttactttagtcgt 397  Q
    ||||||||||||| | |||| |||||||| ||||||| |    ||||| || |||||||||||||||||||| |||  || ||| |||||| ||||| ||    
T  5779824 acataaaagaatt-agattcctaaattgttatctaaaagctcaaacttgatctatgaatcttagaagttcatcacacatattctctcttaccttagtagt 5779922  T
Q  398 tctataaatggacaaatctatctcatctaccttaccgtgaggagaagaatgaaatt-attatgcaacgttcgaaaaagtgtgtttgctatatttctatgt 496  Q
    |||||||| ||  ||  ||||||  | |||||||||  | ||| |||||| ||||| | ||||||||||||| ||||| ||||||||| |||||||||||    
T  5779923 tctataaacgggaaaccctatcttgtttaccttacctagtggaaaagaataaaattcaatatgcaacgttcggaaaagagtgtttgctctatttctatgt 5780022  T
Q  497 tca 499  Q
    |||    
T  5780023 tca 5780025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 566 - 630
Target Start/End: Complemental strand, 48145692 - 48145628
Alignment:
Q  566 agtgttagttgaacatctatttgtttgacaatcatatttttataatgaaaagtatgtatcggcac 630  Q
    ||||||| ||||||||| ||||| ||||||| |||||||||| || ||||||||||||| |||||    
T  48145692 agtgttatttgaacatcaatttgcttgacaaccatatttttacaaagaaaagtatgtattggcac 48145628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 568 - 622
Target Start/End: Original strand, 40854560 - 40854614
Alignment:
Q  568 tgttagttgaacatctatttgtttgacaatcatatttttataatgaaaagtatgt 622  Q
    ||||| ||||||||| ||||| ||||||| |||||||||| || |||||||||||    
T  40854560 tgttatttgaacatcaatttggttgacaaccatatttttacaaagaaaagtatgt 40854614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 568 - 622
Target Start/End: Original strand, 47954007 - 47954061
Alignment:
Q  568 tgttagttgaacatctatttgtttgacaatcatatttttataatgaaaagtatgt 622  Q
    ||||| ||||||||| ||||  ||||||| ||||||||||||| |||||||||||    
T  47954007 tgttatttgaacatcaatttagttgacaaccatatttttataaagaaaagtatgt 47954061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 568 - 622
Target Start/End: Complemental strand, 48353162 - 48353108
Alignment:
Q  568 tgttagttgaacatctatttgtttgacaatcatatttttataatgaaaagtatgt 622  Q
    ||||| ||||||||| ||||| ||||||||||||||||||||| |||||||||||    
T  48353162 tgttatttgaacatcaatttggttgacaatcatatttttataaagaaaagtatgt 48353108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 316 - 433
Target Start/End: Complemental strand, 6878893 - 6878776
Alignment:
Q  316 attcttaaattgtcatctaaaggaattaacttcatttatgaatcttagaagttcattacatactctttcttactttagtcgttctataaatggacaaatc 415  Q
    |||||||||||||||||||||||    ||||||  || |||||||||||||| ||  ||||||  | |||||| ||||| |||||| ||| |||||| ||    
T  6878893 attcttaaattgtcatctaaaggctccaacttctcttgtgaatcttagaagtacaccacataccatctcttaccttagtagttctacaaacggacaattc 6878794  T
Q  416 tatctcatctaccttacc 433  Q
    ||| || |||||||||||    
T  6878793 tatgtcgtctaccttacc 6878776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 300 - 401
Target Start/End: Complemental strand, 25781313 - 25781212
Alignment:
Q  300 acataaaagaattgaaattcttaaattgtcatctaaaggaattaacttcatttatgaatcttagaagttcattacatactctttcttactttagtcgttc 399  Q
    |||||||||||||| ||||| ||||||||||||||||||    |||||  | |||||||||||||||||| |  |||||||| ||||||  |||| ||||    
T  25781313 acataaaagaattggaattcctaaattgtcatctaaaggctccaactttgtctatgaatcttagaagttcctcgcatactctctcttaccatagtagttc 25781214  T
Q  400 ta 401  Q
    ||    
T  25781213 ta 25781212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 300 - 411
Target Start/End: Complemental strand, 25780027 - 25779916
Alignment:
Q  300 acataaaagaattgaaattcttaaattgtcatctaaaggaattaacttcatttatgaatcttagaagttcattacatactctttcttactttagtcgttc 399  Q
    ||||||||||||||  |||| ||||||||||||||||||    ||||||||||||||||| || |||||    ||||||||| ||||||  |||| ||||    
T  25780027 acataaaagaattgggattcctaaattgtcatctaaaggctccaacttcatttatgaatcgtacaagtttcgcacatactctctcttaccatagtagttc 25779928  T
Q  400 tataaatggaca 411  Q
    || ||| |||||    
T  25779927 tacaaacggaca 25779916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 568 - 622
Target Start/End: Complemental strand, 52714899 - 52714845
Alignment:
Q  568 tgttagttgaacatctatttgtttgacaatcatatttttataatgaaaagtatgt 622  Q
    ||||| ||||||||| ||||| ||||||| |||||||||| || |||||||||||    
T  52714899 tgttatttgaacatcaatttggttgacaaccatatttttacaaagaaaagtatgt 52714845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 300 - 365
Target Start/End: Complemental strand, 32466537 - 32466472
Alignment:
Q  300 acataaaagaattgaaattcttaaattgtcatctaaaggaattaacttcatttatgaatcttagaa 365  Q
    ||||||||| ||||| |||| |||||| |||||||||||    |||||| ||||||||||||||||    
T  32466537 acataaaagtattgagattcctaaattatcatctaaaggctccaacttcgtttatgaatcttagaa 32466472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 442 - 522
Target Start/End: Complemental strand, 27748501 - 27748421
Alignment:
Q  442 aagaatgaaattattatgcaacgttcgaaaaagtgtgtttgctatatttctatgttcaaagataagactttggtatgtcac 522  Q
    |||||| | |||| ||||||||||||||||||| ||||||||| | ||||||||||||   ||||||| | ||||||||||    
T  27748501 aagaataagattaatatgcaacgttcgaaaaagagtgtttgctctctttctatgttcattcataagacctaggtatgtcac 27748421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 574 - 622
Target Start/End: Original strand, 18737785 - 18737833
Alignment:
Q  574 ttgaacatctatttgtttgacaatcatatttttataatgaaaagtatgt 622  Q
    ||||||||| ||||| ||||||| ||||||||||||| |||||||||||    
T  18737785 ttgaacatcaatttgattgacaaccatatttttataaagaaaagtatgt 18737833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 568 - 622
Target Start/End: Complemental strand, 33616633 - 33616579
Alignment:
Q  568 tgttagttgaacatctatttgtttgacaatcatatttttataatgaaaagtatgt 622  Q
    ||||| ||||||||| ||||| ||||||| |||||||||| || |||||||||||    
T  33616633 tgttatttgaacatcaatttggttgacaaccatatttttacaaagaaaagtatgt 33616579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 311 - 340
Target Start/End: Original strand, 7706931 - 7706960
Alignment:
Q  311 ttgaaattcttaaattgtcatctaaaggaa 340  Q
    ||||||||||||||||||||||||||||||    
T  7706931 ttgaaattcttaaattgtcatctaaaggaa 7706960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1122 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1122
Description:

Target: scaffold1122; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 300 - 433
Target Start/End: Original strand, 1531 - 1664
Alignment:
Q  300 acataaaagaatt-gaaattcttaaattgtcatctaaaggaattaacttcatttatgaatcttagaagttcattacatactctttcttactttagtcgtt 398  Q
    ||||||||||||| |||||||| || ||||||||||||||  | ||  |  | |||||||||||||||||||| || ||||||||||||||| ||| | |    
T  1531 acataaaagaattagaaattctgaa-ttgtcatctaaaggcttcaaggttgtatatgaatcttagaagttcatcacgtactctttcttacttcagtagct 1629  T
Q  399 ctataaatggacaaatctatctcatctaccttacc 433  Q
     |||||| ||  || |||| |||||| ||||||||    
T  1630 ttataaacgggtaactctaactcatccaccttacc 1664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University