View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2804_low_11 (Length: 316)
Name: NF2804_low_11
Description: NF2804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2804_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 11 - 270
Target Start/End: Complemental strand, 7953589 - 7953330
Alignment:
| Q |
11 |
atgaacgtataagattgttgaagaggagtaatgaagtaaggttgttgtgaaaagggtaatggtggaagagtgaagaagtgatgatttgagagtgaagttg |
110 |
Q |
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| T |
7953589 |
atgaacgtataaggttgttgaaaaggagtaatgaagtaaggttgttgtgaaaagggtaatggtggaagagtgaagaagtgatgatttgagagtgaagttg |
7953490 |
T |
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| Q |
111 |
ttggagaaaatggtaatgaggtgaagggttgttgagaagaagggacaggaagtgttgtgggtgctttggtttgggattttgatgaatggttttgtgaaat |
210 |
Q |
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| T |
7953489 |
ttggagaaaatggtaatgaggtgaagggttgttgagaagaagggagaggaagtgttgtgggtgctttggtttgggattttgatgaatggttttgtgaaat |
7953390 |
T |
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| Q |
211 |
attattaattttgcaatagaagatgaaacatggcgattcaacttcatatgtgacattgtt |
270 |
Q |
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| T |
7953389 |
attattgattttgcaatagaagatgaaccatggcgattaaacttcatatgtgacattgtt |
7953330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 11 - 300
Target Start/End: Complemental strand, 33005604 - 33005317
Alignment:
| Q |
11 |
atgaacgtataagattgttgaagaggagtaatgaagtaaggttgttgtgaaaagggtaatggtggaagagtgaagaagtgatgatttgagagtgaagttg |
110 |
Q |
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| T |
33005604 |
atgaacgtataaggttgttgaagaagagtaatgaagtagaattgttgcgaaaagggtaatggtggaaaagtgaagtagtgatgatttgagagtgaagttg |
33005505 |
T |
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| Q |
111 |
ttggagaaaatggtaatgaggtgaagggttgttgagaagaagggacaggaagtgttgtgggtgctttgg-tttgggattttgatgaatggttttgtgaaa |
209 |
Q |
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| T |
33005504 |
ttgaagagaatggtaatgtggtaaagggttattgagaagaagggagaggaagtgttgtgggtactttggtttttggattctgttcaatggttttgtgaaa |
33005405 |
T |
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| Q |
210 |
tattattaattttgcaatagaagatgaaacatggcgattcaacttcatatgtgacattgtttgttaataacaacgttaaaccggttatgtt |
300 |
Q |
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| T |
33005404 |
---cattgattttgcagtagaagatgaaacatggcgattcaacttcaaatgtggcattgtttgttaataacaatgttgaccaggttatgtt |
33005317 |
T |
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