View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2804_low_12 (Length: 292)
Name: NF2804_low_12
Description: NF2804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2804_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 29229422 - 29229149
Alignment:
| Q |
1 |
taagtgactgagctttcacatcatggctttgttaagggccctaagaagggaggggtgacaatgtccttgacgaaagtggctgactctattgtctgccccg |
100 |
Q |
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| T |
29229422 |
taagtgactgagctttcacatcatggctttgttaagggccctaagaagggaggggtgacaatgtccttgacgaaagtggctgactctattgtctgccccg |
29229323 |
T |
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| Q |
101 |
tatttaaagcgcgctctgtttctgtaatgtccaactctttgtaactttgtgccttatatatatgagcacatacattgctatctgctcctacataccattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29229322 |
tatttaaagcgcgctctgtttctgtaatgtccaactctttgtaactttgtgccttatatatatgagcacatacattgctatctgctcctacataccattc |
29229223 |
T |
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| Q |
201 |
tatcaatatttcatcttttatgctctcttgataatgacttttctctacccaccctttttctaaaccaaacttat |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29229222 |
tatcaatatttcatcttttatgctctcttgataatgactcttctctacccaccctttttctaaaccaaacttat |
29229149 |
T |
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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 254
Target Start/End: Original strand, 36319170 - 36319227
Alignment:
| Q |
196 |
cattctatcaatatttcatcttttatgctctcttgataatgacttttctctacccaccc |
254 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||||| ||| ||||||||| |
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| T |
36319170 |
cattctatcaatatttcatcttttat-ccctcttgataatgacttctctgtacccaccc |
36319227 |
T |
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