View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2804_low_18 (Length: 242)
Name: NF2804_low_18
Description: NF2804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2804_low_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 37458128 - 37458351
Alignment:
| Q |
1 |
ttgtctatgagaaaaggtatagacaagaagggttttagtgacttacaatagttagaaaggggaagttcagctgcggaacagttcaaccgtagaagaatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37458128 |
ttgtctatgagaaaaggtatagacaagaagggttttagtgacttacaatagttagaaaggggaagttcagctgcggaacagttcaaccgtagaagaatgt |
37458227 |
T |
|
| Q |
101 |
cttagtcatacgtagaggggttcaatgtggacgcaaagaaactcaatacaccagaataatgttttaacaattacaaacacaaagggattcaatatgcagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
37458228 |
cttagtcatacgtagaggggttcaatgtggacgcaaagtaactcaatacaccagaataatgttttaacaatt--aaacaaaaagggattcaatatgcagt |
37458325 |
T |
|
| Q |
201 |
aacagagtgattcacacgtgagagct |
226 |
Q |
| |
|
|||||||||||||| ||||||||||| |
|
|
| T |
37458326 |
aacagagtgattcaaacgtgagagct |
37458351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 41 - 224
Target Start/End: Complemental strand, 11989949 - 11989766
Alignment:
| Q |
41 |
acttacaatagttagaaaggggaagttcagctgcggaacagttcaaccgtagaagaatgtcttagtcatacgtagaggggttcaatgtggacgcaaagaa |
140 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||| ||||||||||| ||||||||| |||| |||| || | |||||| ||||||||||||| || | |
|
|
| T |
11989949 |
acttacaatagtgagaaaagggaagttcagctgcagaacagttcaatggtagaagaacgtctcagtctgactaaaaggggtacaatgtggacgcagagga |
11989850 |
T |
|
| Q |
141 |
actcaatacaccagaataatgttttaacaattacaaacacaaagggattcaatatgcagtaacagagtgattcacacgtgagag |
224 |
Q |
| |
|
| |||||||||| || |||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
11989849 |
attcaatacaccgaaacaatgttttaaaaattacaaacacaaaggaattcaatatgcagcaacagagtgattcatgcgtgagag |
11989766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 219
Target Start/End: Complemental strand, 8570706 - 8570514
Alignment:
| Q |
6 |
tatgagaaaaggtatagacaagaagggttttagtgacttacaatagttagaaaggggaagttcagctgcggaacagttcaaccgtagaagaatgtcttag |
105 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||| |||||| |||||| ||||| |||||| ||| ||||| |||||||||| ||||||||| |||| || |
|
|
| T |
8570706 |
tatgagaaaaggtataaacaagacgggttttagagacttaaaatagtgagaaaagggaagctcaactgcgaaacagttcaatagtagaagaacgtctcag |
8570607 |
T |
|
| Q |
106 |
tcatacgtagaggggttcaatgtggacgcaaagaaactcaatacaccagaataatgttttaacaattacaaacacaaagggattcaatatgcagtaacag |
205 |
Q |
| |
|
| ||| ||||| || || |||||||||| ||| |||||||||||||||||||| ||| |||||||||||||||| |||| | |
|
|
| T |
8570606 |
t-ata--------------------acgcagaggaattcaatacaccggaacaatgttttaacaattacaaatacagagggattcaatatgcactaactg |
8570528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 134 - 224
Target Start/End: Complemental strand, 29455511 - 29455423
Alignment:
| Q |
134 |
caaagaaactcaatacaccagaataatgttttaacaattacaaacacaaagggattcaatatgcagtaacagagtgattcacacgtgagag |
224 |
Q |
| |
|
||||| || |||||||||| || ||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||| |||||||||| |
|
|
| T |
29455511 |
caaaggaattcaatacaccggattaatgttttaacaattacaaacacatagggattcaatttgcagtaacaga--gattctcacgtgagag |
29455423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 143 - 224
Target Start/End: Complemental strand, 29448200 - 29448119
Alignment:
| Q |
143 |
tcaatacaccagaataatgttttaacaattacaaacacaaagggattcaatatgcagtaacagagtgattcacacgtgagag |
224 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||| |||||| ||||||||||| | |||| |||||||||||| |||||||||| |
|
|
| T |
29448200 |
tcaatacaccggaacaatgttttaacaattaccaacacatagggattcaattttcagtgacagagtgattctcacgtgagag |
29448119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 29455618 - 29455529
Alignment:
| Q |
6 |
tatgagaaaaggtatagacaagaagggttttagtgacttacaatagttagaaaggggaagttcagctgcggaacagttcaaccgtagaag |
95 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||| ||||| ||||| | ||||| || ||||||||||| | ||||||||||| ||||||| |
|
|
| T |
29455618 |
tatgagaaaaggtataaacaagaaggattttagagacttgcaatattgagaaaaggaaagttcagctgtgtaacagttcaacagtagaag |
29455529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University