View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2804_low_22 (Length: 221)

Name: NF2804_low_22
Description: NF2804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2804_low_22
NF2804_low_22
[»] chr1 (2 HSPs)
chr1 (1-161)||(26832037-26832197)
chr1 (35-87)||(10629409-10629461)
[»] chr6 (1 HSPs)
chr6 (47-84)||(3218632-3218669)
[»] chr8 (1 HSPs)
chr8 (46-94)||(24074542-24074590)
[»] chr5 (1 HSPs)
chr5 (46-94)||(14487597-14487645)
[»] chr4 (1 HSPs)
chr4 (46-94)||(42488745-42488793)
[»] chr3 (1 HSPs)
chr3 (45-89)||(31435511-31435555)


Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 26832037 - 26832197
Alignment:
Q  1 tagtctatatgcactatatcatcctagtagttggaaattcatcgaaaggtgaataagtgagaagtccgaggttcgaacctcaacccctagatattgcgga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  26832037 tagtctatatgcactatatcatcctagtagttggaaattcatctaaaagtgaataagtgagaagtccgaggtttgaacctcaacccctggatattgcgga 26832136  T
Q  101 cgtttgccgcagaaaccaactcaatgcagccataaatgaagtctaagcattcataatactc 161  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  26832137 cgtttgccgcagaaaccaactcaatgcagccataaatgaagtcttagcatccataatactc 26832197  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 10629461 - 10629409
Alignment:
Q  35 aaattcatcgaaaggtgaataagtgagaagtccgaggttcgaacctcaacccc 87  Q
    ||||||||| |||||||||||| || || |||||||||||||||| |||||||    
T  10629461 aaattcatctaaaggtgaataaatgggatgtccgaggttcgaaccccaacccc 10629409  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 3218669 - 3218632
Alignment:
Q  47 aggtgaataagtgagaagtccgaggttcgaacctcaac 84  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  3218669 aggtgaataagtgagaagttcgaggttcgaacctcaac 3218632  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 24074590 - 24074542
Alignment:
Q  46 aaggtgaataagtgagaagtccgaggttcgaacctcaacccctagatat 94  Q
    ||||||||||||||||  ||||||||||||||| |||||||||| ||||    
T  24074590 aaggtgaataagtgaggtgtccgaggttcgaacttcaacccctacatat 24074542  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 14487645 - 14487597
Alignment:
Q  46 aaggtgaataagtgagaagtccgaggttcgaacctcaacccctagatat 94  Q
    |||||||||||||| ||  ||||||||||||||| ||||||||| ||||    
T  14487645 aaggtgaataagtgggatatccgaggttcgaaccccaacccctacatat 14487597  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 42488793 - 42488745
Alignment:
Q  46 aaggtgaataagtgagaagtccgaggttcgaacctcaacccctagatat 94  Q
    ||||||||||||||||  |||||||||| ||||| ||||||||| ||||    
T  42488793 aaggtgaataagtgaggcgtccgaggtttgaaccccaacccctacatat 42488745  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 31435511 - 31435555
Alignment:
Q  45 aaaggtgaataagtgagaagtccgaggttcgaacctcaaccccta 89  Q
    |||| |||||||||| || |||||||||||||||| |||||||||    
T  31435511 aaagatgaataagtgggatgtccgaggttcgaaccccaaccccta 31435555  T

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