View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2804_low_3 (Length: 563)
Name: NF2804_low_3
Description: NF2804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2804_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 5e-79; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 375 - 548
Target Start/End: Original strand, 25771762 - 25771935
Alignment:
| Q |
375 |
attgaaataacacctggagtagaaactcctaaaacattaatgtggttagtggggtggaggagagaaggggggttgatgaggaaatgtcctcagctcatat |
474 |
Q |
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| T |
25771762 |
attgaaataacacctggagtagaaactcctaaaacattaatgtggttagtggggtgtgacagagaaggggggttgaagaggaaatgtcctcagctcatat |
25771861 |
T |
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| Q |
475 |
tttggaaatgaatctttttactattttattgagacaattgaagcttgaggatgttagtccgattgggaggaggt |
548 |
Q |
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| T |
25771862 |
tttggaaatgaatctttttactattttattgagacaattggagcttgaggatgttagtccgattgggaggaggt |
25771935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 25771591 - 25771693
Alignment:
| Q |
12 |
gagcagagaacacggtatttgcattgcaaaacttgaatttaagattgtaaactggcctcaatcacataaatgtgtcttctcaattccaatagaaaactca |
111 |
Q |
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| T |
25771591 |
gagcagagaacacggtatttgcattgcaaaacttgaatttaagattgtaaactggcctcaatcacatgaatgtgtcttctcaattccaatagaaaactca |
25771690 |
T |
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| Q |
112 |
att |
114 |
Q |
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| T |
25771691 |
att |
25771693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 158 - 332
Target Start/End: Original strand, 25745062 - 25745236
Alignment:
| Q |
158 |
attagaaaatgtaatttctctgtttcgccaacatcaccttcagatgatatgatctaacgtcccgaatttgattagtctaatgcacatatgacctcagatt |
257 |
Q |
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| T |
25745062 |
attagaaaatctaatttatctgtttcgcctacatcatcttcagatgctatgatctaatgtctataatttgattagtttaattcatgtataaactcagatt |
25745161 |
T |
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| Q |
258 |
ttaaacacactctattatacataaaaagagcattacaaaattataaatgaaacatgatgtctctttaatttattt |
332 |
Q |
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| T |
25745162 |
ataaactcaccctgttatacataaaaagaacattgcaaatttataaattagacagggtgtctccttaatctattt |
25745236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 272 - 339
Target Start/End: Original strand, 25731171 - 25731238
Alignment:
| Q |
272 |
ttatacataaaaagagcattacaaaattataaatgaaacatgatgtctctttaatttattttattttt |
339 |
Q |
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| T |
25731171 |
ttatacataaaaagaacattataaaattataaattagataaggtgtctctttagtttattttattttt |
25731238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 45301995 - 45301953
Alignment:
| Q |
13 |
agcagagaacacggtatttgcattgcaaaacttgaatttaaga |
55 |
Q |
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| T |
45301995 |
agcagaggacaaggtatgtgcattgcaaaacttgaatttaaga |
45301953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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