View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2804_low_4 (Length: 550)

Name: NF2804_low_4
Description: NF2804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2804_low_4
NF2804_low_4
[»] chr1 (25 HSPs)
chr1 (13-533)||(29813577-29814097)
chr1 (49-531)||(48052763-48053234)
chr1 (109-516)||(48048288-48048690)
chr1 (38-214)||(48040115-48040291)
chr1 (102-272)||(48034593-48034765)
chr1 (39-179)||(48049384-48049523)
chr1 (38-170)||(48042821-48042953)
chr1 (45-172)||(48055927-48056054)
chr1 (59-176)||(48035738-48035858)
chr1 (59-179)||(29812798-29812919)
chr1 (322-519)||(48039812-48040005)
chr1 (73-179)||(48041301-48041407)
chr1 (322-443)||(48054089-48054209)
chr1 (45-172)||(48050593-48050722)
chr1 (81-158)||(5126502-5126579)
chr1 (81-158)||(48033101-48033178)
chr1 (81-156)||(39972782-39972857)
chr1 (38-136)||(48054332-48054430)
chr1 (81-157)||(22908323-22908399)
chr1 (98-158)||(48054677-48054737)
chr1 (102-156)||(48042225-48042279)
chr1 (103-152)||(48036725-48036774)
chr1 (407-463)||(48034455-48034511)
chr1 (102-153)||(48050016-48050067)
chr1 (340-377)||(48050280-48050317)
[»] chr6 (7 HSPs)
chr6 (326-533)||(32678813-32679018)
chr6 (99-183)||(32678632-32678716)
chr6 (399-479)||(1173252-1173332)
chr6 (98-157)||(10754610-10754669)
chr6 (102-156)||(992459-992513)
chr6 (98-157)||(10750293-10750352)
chr6 (98-156)||(18613088-18613146)
[»] chr3 (6 HSPs)
chr3 (80-157)||(31125752-31125829)
chr3 (102-158)||(47565694-47565750)
chr3 (80-156)||(53107639-53107715)
chr3 (81-156)||(34974803-34974878)
chr3 (98-156)||(38930484-38930542)
chr3 (102-156)||(53682982-53683036)
[»] chr4 (3 HSPs)
chr4 (102-158)||(49152552-49152608)
chr4 (81-156)||(38393559-38393634)
chr4 (102-151)||(26929306-26929355)
[»] chr2 (7 HSPs)
chr2 (81-157)||(6796496-6796572)
chr2 (81-157)||(35926121-35926197)
chr2 (80-156)||(39990580-39990656)
chr2 (81-156)||(6801050-6801125)
chr2 (102-157)||(7181563-7181618)
chr2 (102-156)||(13327013-13327067)
chr2 (98-157)||(35920147-35920206)
[»] chr7 (4 HSPs)
chr7 (81-156)||(43920607-43920682)
chr7 (98-156)||(23780469-23780527)
chr7 (98-156)||(40706106-40706164)
chr7 (102-151)||(46064805-46064854)


Alignment Details
Target: chr1 (Bit Score: 513; Significance: 0; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 13 - 533
Target Start/End: Original strand, 29813577 - 29814097
Alignment:
Q  13 aatatataaaaaacaccgagcttcctgtattaaactaaaatattgaaaaagttaaactcttaaccttcaaaaggggcactcagcaaattgaactcaggac 112  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29813577 aataaataaaaaacaccgagcttcctgtattaaactaaaatattgaaaaagttaaactcttaaccttcaaaaggggcactcagcaaatcgaactcaggac 29813676  T
Q  113 ctctcgcacccaaagcgagaatcaaaccactagaccaaatgccctgatatgaaaagttttagtttgtaagtaagttagttgggacaattgtgtaaggaaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29813677 ctctcgcacccaaagcgagaatcaaaccactagaccaaatgccctgatatgaaaagttttagtttgtaagtaagttagttgggacaattgtgtaaggaaa 29813776  T
Q  213 aattgaagtctatacctcttatcttcatcacatgtcatcactcaacaagttgatgacaattttcattctcatatccaataggatctaaatatgaaatctg 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29813777 aattgaagtctatacctcttatcttcatcacatgtcatcactcaacaagttgatgacaattttcattctcatatccaataggatctaaatatgaaatctg 29813876  T
Q  313 atcatgagttcatgactgaagtaaaagaacattcaaatcagaatattatcaacattgaataccataattctattgtgacttgtgagataaataaatgcaa 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29813877 atcatgagttcatgactgaagtaaaagaacattcaaatcagaatattatcaacattgaataccataattctattgtgacttgtgagataaataaatgcaa 29813976  T
Q  413 taggaaaatcaaactatgcatcagaaaccacactgataaagcaatgcaagcccaaaaatgctgagattggtggtgctacatatggatttctgtctatgct 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29813977 taggaaaatcaaactatgcatcagaaaccacactgataaagcaatgcaagcccaaaaatgctgagattggtggtgctacatatggatttctgtctatgct 29814076  T
Q  513 cccattttctggggcaggggt 533  Q
    |||||||||||||||||||||    
T  29814077 cccattttctggggcaggggt 29814097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 49 - 531
Target Start/End: Complemental strand, 48053234 - 48052763
Alignment:
Q  49 aaaatattgaaaaagttaaactcttaaccttcaaaa-ggggcactcagcaaattgaactcaggacctctcgcacccaaagcgagaatcaaaccactagac 147  Q
    ||||||||||||| ||||||||  |||||||||||| |||||| || |  |||||||||| |||||||||||||||||||||||||| | ||||||||||    
T  48053234 aaaatattgaaaa-gttaaacttctaaccttcaaaaaggggcattccgagaattgaactcgggacctctcgcacccaaagcgagaattataccactagac 48053136  T
Q  148 caaatgccctgatatgaaaagttttagtttgtaagtaagttagttgggacaattgtgtaaggaaaaattgaagtctatacctcttatcttcatcacatgt 247  Q
    |||||||||||||||||||||| |||||||||||||    |||||| ||||||||| ||||||||||   |||| |||||||||| | |||| || ||||    
T  48053135 caaatgccctgatatgaaaagtattagtttgtaagt----tagttgagacaattgtataaggaaaaaaaaaagtttatacctcttgttttcaccaaatgt 48053040  T
Q  248 catcactcaacaagttgatgacaat-tttcattct------catatccaataggatctaaatatgaaatctgatcatgagttcatgactgaagtaaaaga 340  Q
    ||| ||| ||||| | ||||||||| |||| ||||      ||||| |||||  |||| | ||| || |||||||||||        |||||| ||||||    
T  48053039 catgactaaacaattagatgacaatatttctttctaatattcatattcaata--atctcattattaa-tctgatcatga--------ctgaagcaaaaga 48052951  T
Q  341 acattcaaatcagaatattatcaacattgaataccataattctattgtgacttgtgagataaataaatgcaataggaaaatc-aaactatgcatcagaaa 439  Q
    |||||||| ||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||    
T  48052950 acattcaa-tcagaatgttatcaacattgaaaaccataattctattgtgacatgtgagataaataaatgcaacaggaaaatcaaaactatgcatcagaaa 48052852  T
Q  440 ccacactgataaagcaatgcaagcccaaaaatgctgagattggtggtgctacatatggatttctgtctatgctcccattttctggggcaggg 531  Q
    |||   |||||||||||| ||||||||||||||||||||||| || || |||   |||||||||| ||||||| ||||||  ||||||||||    
T  48052851 ccaatttgataaagcaattcaagcccaaaaatgctgagattgatgttg-tac--ctggatttctggctatgcttccatttcttggggcaggg 48052763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 109 - 516
Target Start/End: Complemental strand, 48048690 - 48048288
Alignment:
Q  109 ggacctctcgcacccaaagcgagaatcaaaccactag-accaaatgccctgatatgaaaagttttagtttgtaagtaagttagttgggacaattgtgtaa 207  Q
    |||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||| |||    
T  48048690 ggacctctcgcacccaaagcgagaatgataccactaggaccaaatgccctgatatgaaaagttttagtttggtagtaagttagttgagacaattgtttaa 48048591  T
Q  208 ggaaaaattgaagtctatacctcttatcttcatcacatgtcatcactcaacaagttgatgacaattttcattc------tcatatccaataggatctaaa 301  Q
    | |||||   | || |||||||||||| |||| |||| ||||||||| | ||| ||||||||||| || || |      |||||||||||||||||| |     
T  48048590 gaaaaaa--catgtttatacctcttattttcaccacaggtcatcactaatcaatttgatgacaatatttatgctaatattcatatccaataggatctcat 48048493  T
Q  302 tatgaaatctgatcatgagttcatgactgaagtaaaagaacattcaaatcagaatattatcaacattgaataccataattctattgtgacttgtgagata 401  Q
    ||||  ||||||        |||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||| ||||  |||||||||| ||||    
T  48048492 tatgtgatctga--------tcatgactgaagtaaaagaacattcaaaccagaatgttatcaatattgaataccataactctaccgtgacttgtgtgata 48048401  T
Q  402 aataaatgcaataggaaaatcaa-actatgcatcagaaaccacactgataaagcaatgcaagcccaaaaatgctgagattggtggtgctacatatggatt 500  Q
    ||||||| |||  || ||||||| |||| ||||||||| |||   |||||||||||| ||||||||||| ||||||||||| || || |||   ||||||    
T  48048400 aataaattcaactggcaaatcaacactacgcatcagaagccaatttgataaagcaattcaagcccaaaagtgctgagattgatgctg-tac--ctggatt 48048304  T
Q  501 tctgtctatgctccca 516  Q
    ||||||||||||||||    
T  48048303 tctgtctatgctccca 48048288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 38 - 214
Target Start/End: Complemental strand, 48040291 - 48040115
Alignment:
Q  38 tgtattaaactaaaatattgaaaaagttaaactcttaaccttcaaaa-ggggcactcagcaaattgaactcaggacctctcgcacccaaagcgagaatca 136  Q
    |||||| |||||||||||| ||||||||||| || | |||||||||| |||||| || |  ||| |||||| ||||||||||||||||||||||||||||    
T  48040291 tgtatttaactaaaatatt-aaaaagttaaattcctgaccttcaaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatca 48040193  T
Q  137 aaccactagaccaaatgccctgatatgaaaagttttagtttgtaagtaagttagttgggacaattgtgtaaggaaaaa 214  Q
     |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| |||| |||||    
T  48040192 taccactagaccaaatgccctgatatgaaaagttttagtttgttagttagttagttgagacaattgtttaagaaaaaa 48040115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 102 - 272
Target Start/End: Complemental strand, 48034765 - 48034593
Alignment:
Q  102 gaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccctgatatgaaaagttttagtttgtaagtaagttagttgggacaatt 201  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||| || |||| |||||||||||    
T  48034765 gaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctgctatgaaaagtattagtttgtaaatatgttatttgggacaatt 48034666  T
Q  202 gtgtaag--gaaaaattgaagtctatacctcttatcttcatcacatgtcatcactcaacaagttgatgacaat 272  Q
     | | ||  | |||| | |||| |||||||||||| ||||  |||||| |||||| |||||||  ||||||||    
T  48034665 attttagttggaaaaataaagtttatacctcttattttcacaacatgttatcactaaacaagtcaatgacaat 48034593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 39 - 179
Target Start/End: Complemental strand, 48049523 - 48049384
Alignment:
Q  39 gtattaaactaaaatattgaaaaagttaaactcttaaccttcaaaaggggcactcagcaaattgaactcaggacctctcgcacccaaagcgagaatcaaa 138  Q
    ||||| |||||| |||||| ||| ||||| ||| |||||||||||||||||| || |  ||| |||||| |||||||||||||||||||||||||||| |    
T  48049523 gtatttaactaatatattggaaa-gttaacctcctaaccttcaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcata 48049425  T
Q  139 ccactagaccaaatgccctgatatgaaaagttttagtttgt 179  Q
    ||||||||||||||||||| |||||||||||| | ||||||    
T  48049424 ccactagaccaaatgcccttatatgaaaagttattgtttgt 48049384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 38 - 170
Target Start/End: Complemental strand, 48042953 - 48042821
Alignment:
Q  38 tgtattaaactaaaatattgaaaaagttaaactcttaaccttcaaaa-ggggcactcagcaaattgaactcaggacctctcgcacccaaagcgagaatca 136  Q
    |||||| ||||||||| |||||||| | |||| | |||||||||||| |||||| ||||  ||| |||||| || |||||||||||||||||||||||||    
T  48042953 tgtatttaactaaaatgttgaaaaa-taaaacccctaaccttcaaaaaggggcattcagagaatcgaactccgggcctctcgcacccaaagcgagaatca 48042855  T
Q  137 aaccactagaccaaatgccctgatatgaaaagtt 170  Q
     |||||||||||||||||||||||||||||||||    
T  48042854 taccactagaccaaatgccctgatatgaaaagtt 48042821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 45 - 172
Target Start/End: Complemental strand, 48056054 - 48055927
Alignment:
Q  45 aactaaaatattgaaaaagttaaactcttaaccttcaaaa-ggggcactcagcaaattgaactcaggacctctcgcacccaaagcgagaatcaaaccact 143  Q
    ||||||||| |||||||| | |||||| |||||||||||| |||||| || |  ||| |||||| |||||||||||||||||||||||||||| ||||||    
T  48056054 aactaaaatgttgaaaaa-taaaactcctaaccttcaaaaaggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccact 48055956  T
Q  144 agaccaaatgccctgatatgaaaagtttt 172  Q
    ||||||||||||||| |||||||||||||    
T  48055955 agaccaaatgccctgctatgaaaagtttt 48055927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 59 - 176
Target Start/End: Complemental strand, 48035858 - 48035738
Alignment:
Q  59 aaaagttaaactcttaaccttca---aaaggggcactcagcaaattgaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgcc 155  Q
    |||| ||||||||||||||||||   ||||||||| || |  ||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  48035858 aaaatttaaactcttaaccttcacaaaaaggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgcc 48035759  T
Q  156 ctgatatgaaaagttttagtt 176  Q
    |||||||||||| || |||||    
T  48035758 ctgatatgaaaaattatagtt 48035738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 59 - 179
Target Start/End: Original strand, 29812798 - 29812919
Alignment:
Q  59 aaaagttaaactcttaaccttcaaaa-ggggcactcagcaaattgaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccct 157  Q
    ||||||||||||| |||||||||||| |||||| || |  ||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29812798 aaaagttaaactcctaaccttcaaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 29812897  T
Q  158 gatatgaaaagttttagtttgt 179  Q
    || ||| |||||| | ||||||    
T  29812898 gacatgcaaagttattgtttgt 29812919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 322 - 519
Target Start/End: Complemental strand, 48040005 - 48039812
Alignment:
Q  322 tcatgactgaagtaaaagaacattcaaatcagaatattatcaacattgaataccataattctattgtgacttgtgagataaataaatgcaataggaaaat 421  Q
    |||| ||||||||||||||||||||||  |||||| ||||||  |||||||| ||||  |||| || |||||||||||||||||||||||||||| ||||    
T  48040005 tcattactgaagtaaaagaacattcaagccagaatgttatcat-attgaataacatagctctactgagacttgtgagataaataaatgcaataggcaaat 48039907  T
Q  422 -caaactatgcatcagaaaccacactgataaagcaatgcaagcccaaaaatgctgagattggtggtgctacatatggatttctgtctatgctcccattt 519  Q
      ||||||||||| ||||||||   |||||||||| | ||||||| ||| | ||||||||| || || |||   |||||||||||||||||||||||||    
T  48039906 gaaaactatgcataagaaaccaatttgataaagcatttcaagccc-aaagtactgagattgatgatg-tac--ctggatttctgtctatgctcccattt 48039812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 73 - 179
Target Start/End: Complemental strand, 48041407 - 48041301
Alignment:
Q  73 taaccttcaaaaggggcactcagcaaattgaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccctgatatgaaaagtttt 172  Q
    ||||| |||||||||||| || |  ||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |    
T  48041407 taaccatcaaaaggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgcccttatatgaaaagttat 48041308  T
Q  173 agtttgt 179  Q
     ||||||    
T  48041307 tgtttgt 48041301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 322 - 443
Target Start/End: Complemental strand, 48054209 - 48054089
Alignment:
Q  322 tcatgactgaagtaaaagaacattcaaatcagaatattatcaacattgaataccataattctattgtgacttgtgagataaataaatgcaataggaaaat 421  Q
    ||||||| |||| |||||||||||||||||||| | |||| ||||||||||||| || |||| |||||||||| ||||| |||||||||| |||  | ||    
T  48054209 tcatgacagaagcaaaagaacattcaaatcagattgttataaacattgaatacc-tagttctgttgtgacttgcgagatgaataaatgcattagacagat 48054111  T
Q  422 caaactatgcatcagaaaccac 443  Q
    ||||||||||||||||||||||    
T  48054110 caaactatgcatcagaaaccac 48054089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 45 - 172
Target Start/End: Complemental strand, 48050722 - 48050593
Alignment:
Q  45 aactaaaatattgaaaaagttaaactcttaaccttcaaaa---ggggcactcagcaaattgaactcaggacctctcgcacccaaagcgagaatcaaacca 141  Q
    ||||||||| |||||||| | |||||| ||||||||| ||   |||||| || |  ||| |||||| |||||||||||||||||||||||||||| ||||    
T  48050722 aactaaaatgttgaaaaa-taaaactcctaaccttcacaaaagggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcatacca 48050624  T
Q  142 ctagaccaaatgccctgatatgaaaagtttt 172  Q
    ||||||||||||||||  |||||||||||||    
T  48050623 ctagaccaaatgccctactatgaaaagtttt 48050593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 81 - 158
Target Start/End: Complemental strand, 5126579 - 5126502
Alignment:
Q  81 aaaaggggcactcagcaaattgaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccctg 158  Q
    |||||||||| || |  ||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5126579 aaaaggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 5126502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 81 - 158
Target Start/End: Complemental strand, 48033178 - 48033101
Alignment:
Q  81 aaaaggggcactcagcaaattgaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccctg 158  Q
    |||||||||| || |  ||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  48033178 aaaaggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 48033101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 81 - 156
Target Start/End: Original strand, 39972782 - 39972857
Alignment:
Q  81 aaaaggggcactcagcaaattgaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccc 156  Q
    |||||||||| || |  |||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||    
T  39972782 aaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 39972857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 48054430 - 48054332
Alignment:
Q  38 tgtattaaactaaaatattgaaaaagttaaactcttaaccttc-aaaaggggcactcagcaaattgaactcaggacctctcgcacccaaagcgagaatca 136  Q
    |||||| ||||||||||||||||| ||||||||| | |||||| ||||| |||| || |  ||| |||||||||||||||||||||||||||||||||||    
T  48054430 tgtatttaactaaaatattgaaaa-gttaaactcctgaccttcgaaaagcggcattctgagaatcgaactcaggacctctcgcacccaaagcgagaatca 48054332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 157
Target Start/End: Complemental strand, 22908399 - 22908323
Alignment:
Q  81 aaaaggggcactcagcaaattgaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccct 157  Q
    |||||||||| || |  ||||||||||  |||||||||||||| |||||||||||| ||||||||||||||||||||    
T  22908399 aaaaggggcattccgagaattgaactcgagacctctcgcaccctaagcgagaatcataccactagaccaaatgccct 22908323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 48054737 - 48054677
Alignment:
Q  98 aattgaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccctg 158  Q
    |||||||||| | |||||||||||||||||||||||||| ||| |||||||||||||||||    
T  48054737 aattgaactcggaacctctcgcacccaaagcgagaatcatacctctagaccaaatgccctg 48054677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 48042279 - 48042225
Alignment:
Q  102 gaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccc 156  Q
    |||||| | ||||||||||||| |||||||||||| |||||||||||||||||||    
T  48042279 gaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 48042225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 152
Target Start/End: Complemental strand, 48036774 - 48036725
Alignment:
Q  103 aactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaat 152  Q
    ||||| |||||||| ||||||||||||||||||| |||||||||||||||    
T  48036774 aactccggacctctggcacccaaagcgagaatcataccactagaccaaat 48036725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 407 - 463
Target Start/End: Complemental strand, 48034511 - 48034455
Alignment:
Q  407 atgcaataggaaaatcaaactatgcatcagaaaccacactgataaagcaatgcaagc 463  Q
    ||||||| || |||||||||||||||||||||  |||| ||||||||||||||||||    
T  48034511 atgcaattggcaaatcaaactatgcatcagaagtcacattgataaagcaatgcaagc 48034455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 102 - 153
Target Start/End: Complemental strand, 48050067 - 48050016
Alignment:
Q  102 gaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatg 153  Q
    |||||| | ||||||| |||||||||||||||||| ||||||||||||||||    
T  48050067 gaactcggaacctctcacacccaaagcgagaatcataccactagaccaaatg 48050016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 340 - 377
Target Start/End: Complemental strand, 48050317 - 48050280
Alignment:
Q  340 aacattcaaatcagaatattatcaacattgaataccat 377  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  48050317 aacattcaaatcagaatgttatcaacattgaataccat 48050280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 326 - 533
Target Start/End: Original strand, 32678813 - 32679018
Alignment:
Q  326 gactgaagtaaaagaacattcaaatcagaatattatcaacattgaataccataattctattgtgacttgtgagataaataaatgcaataggaaaat-caa 424  Q
    |||||||| ||||||||||||||| |||||| ||||||| ||||||||||||   |||| |||||| |||||||||||||||||||||||| ||||  ||    
T  32678813 gactgaagcaaaagaacattcaaaccagaatgttatcaatattgaataccatggctctactgtgacatgtgagataaataaatgcaataggcaaatgaaa 32678912  T
Q  425 actatgcatcagaaaccacactgataaagcaatgcaagcccaaaaatgctgagattggtggtgctacatatggatttctgtctatgctcccattttctgg 524  Q
    |||||||||||||||| |   |||||||||| | |||||||||||||||||||||| |  | | |||   ||||||||||||||||||||||||| || |    
T  32678913 actatgcatcagaaactaatttgataaagcagttcaagcccaaaaatgctgagatt-gacgaggtac--ctggatttctgtctatgctcccatttccttg 32679009  T
Q  525 ggcaggggt 533  Q
    || ||||||    
T  32679010 ggaaggggt 32679018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 32678632 - 32678716
Alignment:
Q  99 attgaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccctgatatgaaaagttttagtttgtaagt 183  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||| |||||    
T  32678632 attgaactcaggacctctcacacccaaagcgagaatcataccactagaccaaatgcccttatatgaaaggttttagtttataagt 32678716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 399 - 479
Target Start/End: Complemental strand, 1173332 - 1173252
Alignment:
Q  399 ataaataaatgcaataggaaaatcaaactatgcatcagaaaccacactgataaagcaatgcaagcccaaaaatgctgagat 479  Q
    ||||||||||||| |||| |||||||||||| |||||||||||||  | |||||||||||||||||||| |||||||||||    
T  1173332 ataaataaatgcattaggcaaatcaaactatacatcagaaaccacttttataaagcaatgcaagcccaacaatgctgagat 1173252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 10754610 - 10754669
Alignment:
Q  98 aattgaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccct 157  Q
    |||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  10754610 aattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccct 10754669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 992459 - 992513
Alignment:
Q  102 gaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccc 156  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  992459 gaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 992513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 10750293 - 10750352
Alignment:
Q  98 aattgaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccct 157  Q
    |||||||||| |||||||| |||||| |||||||||||| ||||||||| ||||||||||    
T  10750293 aattgaactcgggacctcttgcaccctaagcgagaatcataccactagatcaaatgccct 10750352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 156
Target Start/End: Complemental strand, 18613146 - 18613088
Alignment:
Q  98 aattgaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccc 156  Q
    |||| ||||| ||||||||||||||| |||| ||||||| ||||||||| |||||||||    
T  18613146 aattaaactcgggacctctcgcaccctaagcaagaatcataccactagatcaaatgccc 18613088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 31125829 - 31125752
Alignment:
Q  80 caaaaggggcactcagcaaattgaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccct 157  Q
    ||||||||||| || |  |||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  31125829 caaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccct 31125752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 102 - 158
Target Start/End: Original strand, 47565694 - 47565750
Alignment:
Q  102 gaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccctg 158  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  47565694 gaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 47565750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 53107715 - 53107639
Alignment:
Q  80 caaaaggggcactcagcaaattgaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccc 156  Q
    ||||||||||| || |  |||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||    
T  53107715 caaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 53107639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 81 - 156
Target Start/End: Complemental strand, 34974878 - 34974803
Alignment:
Q  81 aaaaggggcactcagcaaattgaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccc 156  Q
    |||||||||| || |  ||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  34974878 aaaaggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 34974803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 98 - 156
Target Start/End: Original strand, 38930484 - 38930542
Alignment:
Q  98 aattgaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccc 156  Q
    |||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||    
T  38930484 aattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 38930542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 53683036 - 53682982
Alignment:
Q  102 gaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccc 156  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  53683036 gaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 53682982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 102 - 158
Target Start/End: Original strand, 49152552 - 49152608
Alignment:
Q  102 gaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccctg 158  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  49152552 gaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctg 49152608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 81 - 156
Target Start/End: Original strand, 38393559 - 38393634
Alignment:
Q  81 aaaaggggcactcagcaaattgaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccc 156  Q
    |||||||||| || |  |||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||    
T  38393559 aaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 38393634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 26929306 - 26929355
Alignment:
Q  102 gaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaa 151  Q
    ||||||| |||||||||||||| |||||||||||| ||||||||||||||    
T  26929306 gaactcacgacctctcgcacccgaagcgagaatcataccactagaccaaa 26929355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 81 - 157
Target Start/End: Complemental strand, 6796572 - 6796496
Alignment:
Q  81 aaaaggggcactcagcaaattgaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccct 157  Q
    |||||||||| || |  ||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6796572 aaaaggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 6796496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 35926121 - 35926197
Alignment:
Q  81 aaaaggggcactcagcaaattgaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccct 157  Q
    |||||||||| || |  |||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  35926121 aaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccct 35926197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 39990656 - 39990580
Alignment:
Q  80 caaaaggggcactcagcaaattgaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccc 156  Q
    ||||||||||| || |  |||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||    
T  39990656 caaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 39990580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 81 - 156
Target Start/End: Original strand, 6801050 - 6801125
Alignment:
Q  81 aaaaggggcactcagcaaattgaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccc 156  Q
    |||||||||| || |  |||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||    
T  6801050 aaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 6801125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 7181618 - 7181563
Alignment:
Q  102 gaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccct 157  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7181618 gaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 7181563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 13327013 - 13327067
Alignment:
Q  102 gaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccc 156  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  13327013 gaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 13327067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 35920147 - 35920206
Alignment:
Q  98 aattgaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccct 157  Q
    |||||||||  ||||||||||||||| |||| ||||||| |||||||||||| |||||||    
T  35920147 aattgaacttgggacctctcgcaccctaagcaagaatcataccactagaccagatgccct 35920206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 81 - 156
Target Start/End: Complemental strand, 43920682 - 43920607
Alignment:
Q  81 aaaaggggcactcagcaaattgaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccc 156  Q
    |||||||||| || |  |||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||    
T  43920682 aaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 43920607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 98 - 156
Target Start/End: Complemental strand, 23780527 - 23780469
Alignment:
Q  98 aattgaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccc 156  Q
    |||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||    
T  23780527 aattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 23780469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 98 - 156
Target Start/End: Complemental strand, 40706164 - 40706106
Alignment:
Q  98 aattgaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccc 156  Q
    |||||||||| ||||||||||||||  |||||||||||| || ||||||||||||||||    
T  40706164 aattgaactcgggacctctcgcaccttaagcgagaatcatacaactagaccaaatgccc 40706106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 46064805 - 46064854
Alignment:
Q  102 gaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaa 151  Q
    ||||||| |||||||||||||| |||||||||||| ||||||||||||||    
T  46064805 gaactcacgacctctcgcacccgaagcgagaatcataccactagaccaaa 46064854  T

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