View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2804_low_5 (Length: 537)
Name: NF2804_low_5
Description: NF2804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2804_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 10 - 519
Target Start/End: Complemental strand, 43555679 - 43555171
Alignment:
| Q |
10 |
catcatcatcaaatggcagaagcacgttctaatgaatcgcttgaaatcacaaacgaaaatgagttcacagaaaaggaagctgctgagcaacttattcagc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43555679 |
catcatcatcaaatggcagaagcacgttctaatgtatcgcttgaaatcacaaacgaaaatgagttcacagaaaaggaagctgctgagcaacttattcagc |
43555580 |
T |
|
| Q |
110 |
tgagcaatgaagttaggatcagtagcagcaagaggaatatgattacattggaaaaaggattggagttggttgatgaagccataactaagattgaatctca |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
43555579 |
tgagcaatgaagttaggatcagtagcagcaagaggaatatgattacattggaaaaaggattggagttggttgatgaatccataactaagattgaatctca |
43555480 |
T |
|
| Q |
210 |
tcagccaaagaatcatcattatgagatgaagaaatttcgatctcttaatgatgtttacatggaggctgcccccaaatgtagcagaaagagtatcaattgc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43555479 |
tcagccaaagaatcatcattatgagatgaagaaatttcgatctcttaatgatgtttacatggaggctgcccccaaatgtagcagaaagagtatcaattgc |
43555380 |
T |
|
| Q |
310 |
aagaggaagaagacaacattggaggaagaaaaggctgataaaagaataattatcaaatccataactaagattgaatcatctcaggcaaacaatcatcaag |
409 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
43555379 |
aagaggaataagacaacattggaggaagaaaaggctgataaaagaataattatcaaatccataactaagattgaatcatctcaggcaaacagtcatcaag |
43555280 |
T |
|
| Q |
410 |
agatgaagaaatatcgatctcttgtggatatacacaaggtgactacacgcattagcttcaaaaagggacaaaggaaccaaaaccctaaacaagggtaggt |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43555279 |
agatgaagaaatatcgatctcttgtggatatacacaaggtgactacacgcattagcatc-aaaagggacaaaggaaccaaaaccctaaacaagggtaggt |
43555181 |
T |
|
| Q |
510 |
gaacgtcttg |
519 |
Q |
| |
|
|||||||||| |
|
|
| T |
43555180 |
gaacgtcttg |
43555171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University