View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2804_low_7 (Length: 383)

Name: NF2804_low_7
Description: NF2804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2804_low_7
NF2804_low_7
[»] chr2 (14 HSPs)
chr2 (1-383)||(31362530-31362905)
chr2 (141-372)||(31257792-31258018)
chr2 (274-383)||(31416417-31416526)
chr2 (197-363)||(31310093-31310257)
chr2 (246-369)||(31283569-31283690)
chr2 (246-369)||(31376716-31376837)
chr2 (269-363)||(31294994-31295088)
chr2 (247-369)||(31389006-31389130)
chr2 (31-170)||(31310429-31310565)
chr2 (40-170)||(31283752-31283880)
chr2 (1-171)||(31295166-31295341)
chr2 (1-69)||(31376938-31377006)
chr2 (6-69)||(31389178-31389241)
chr2 (33-69)||(31258082-31258118)


Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 31362905 - 31362530
Alignment:
Q  1 cattctcattttgttcatatctcaaacatcttttggagctactactattcaccccgacgaaagtatgattcttatttctgctatactaccaaacagtata 100  Q
    ||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  31362905 cattctcatttggttgatatctcaaacatcttttggagctaatactattcaccccgacgaaagtatgattcttatttctgctatactaccaaccaatata 31362806  T
Q  101 gaaatttctttcatctttattttcaagttattttcatcttaggattcatgtta--gttcaaatatcatgtattattttttgctcatgtagaaattctgta 198  Q
    |||||||||||||||||||||||||           ||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  31362805 gaaatttctttcatctttattttca-----------tctaaggattcatgttatagttcaaatatcatgtattattttttgctcatgtagaaattctgta 31362717  T
Q  199 tatatatttaatgacatgtgtgtgtagtttagaaatcttttcagtgcttagctgatacctctgaattgtatatatat--agagaaagctcttcacgttat 296  Q
    | ||||||| |||||||||||||||||||||||| | |||||||| |||| |||||| |||| |||||||| |||||  ||||||||||||| | |||||    
T  31362716 tctatatttgatgacatgtgtgtgtagtttagaagttttttcagtacttatctgatagctctcaattgtatgtatatttagagaaagctcttgaagttat 31362617  T
Q  297 agctaaatcacttggtaagaaggattggaactttgacattgatccatgcagcaataaacctaactggtttacacctcccataccgaa 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31362616 agctaaatcacttggtaagaaggattggaactttgacattgatccatgcagcaataaacctaactggtttacgcctcccataccgaa 31362530  T

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Target: chr2; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 141 - 372
Target Start/End: Complemental strand, 31258018 - 31257792
Alignment:
Q  141 aggattcatgttagttcaaatatcatgtattattttttgctcatgtagaaattctgtatatatatttaatgacatgtgtgtgtagtttagaaatcttttc 240  Q
    ||||||| |||||| | |||||||||||||| | ||||||| || |||||||||||||||||| ||| ||||||||| |||  | |  |||||| |||||    
T  31258018 aggattcctgttaggttaaatatcatgtattttcttttgctgatatagaaattctgtatatatgtttgatgacatgtttgtaaaat--agaaat-ttttc 31257922  T
Q  241 agtgcttagctgatacctctgaattgtatatatatagagaaagctcttcacgttatagctaaatcacttggtaagaaggattggaactttgacattgatc 340  Q
    ||| ||||||||||| |||| |||||||||| ||  ||||||| |||| | |||||||||||||||||||||||||| ||||||||||| |||| |||||    
T  31257921 agtacttagctgatagctctcaattgtatattta--gagaaagttcttgaagttatagctaaatcacttggtaagaaagattggaacttcgacactgatc 31257824  T
Q  341 catgcagcaataaacctaactggtttacacct 372  Q
    |||||||||| ||||||||||||  |||||||    
T  31257823 catgcagcaacaaacctaactgggctacacct 31257792  T

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Target: chr2; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 274 - 383
Target Start/End: Original strand, 31416417 - 31416526
Alignment:
Q  274 atagagaaagctcttcacgttatagctaaatcacttggtaagaaggattggaactttgacattgatccatgcagcaataaacctaactggtttacacctc 373  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||     
T  31416417 atagagaaagctcttgaagttatagctaaatcacttggtaagaaggattggaactttgacattgatccatgcagcaataaacctaactgggttacgccta 31416516  T
Q  374 ccataccgaa 383  Q
    | ||||||||    
T  31416517 cgataccgaa 31416526  T

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Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 197 - 363
Target Start/End: Complemental strand, 31310257 - 31310093
Alignment:
Q  197 tatatatatttaatgacatgtgtgtgtagtttagaaatcttttcagtgcttagctgatacctctgaattgtatatatatagagaaagctcttcacgttat 296  Q
    ||||||||||| ||||||||||||||||||||| ||   |||||||| |||| |||||| |||| |||| ||||| ||  | |||||||||| | | |||    
T  31310257 tatatatatttgatgacatgtgtgtgtagtttaaaatatttttcagtacttaactgatagctctaaattttatattta--gtgaaagctcttgaagatat 31310160  T
Q  297 agctaaatcacttggtaagaaggattggaactttgacattgatccatgcagcaataaacctaactgg 363  Q
    |||||||||||||||||||| ||||||||||||   |||||||||||||||||| ||  ||||||||    
T  31310159 agctaaatcacttggtaagacggattggaacttcagcattgatccatgcagcaacaattctaactgg 31310093  T

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Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 246 - 369
Target Start/End: Complemental strand, 31283690 - 31283569
Alignment:
Q  246 ttagctgatacctctgaattgtatatatatagagaaagctcttcacgttatagctaaatcacttggtaagaaggattggaactttgacattgatccatgc 345  Q
    |||||||||| |||| |||||||||| ||  |||||||||||| |   |||||| ||||||||||| ||||||||||||||||| |||||||||||||||    
T  31283690 ttagctgatagctctcaattgtatattta--gagaaagctcttgaaagtatagccaaatcacttgggaagaaggattggaacttcgacattgatccatgc 31283593  T
Q  346 agcaataaacctaactggtttaca 369  Q
    ||||| |||||||| |||||||||    
T  31283592 agcaacaaacctaaatggtttaca 31283569  T

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Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 246 - 369
Target Start/End: Complemental strand, 31376837 - 31376716
Alignment:
Q  246 ttagctgatacctctgaattgtatatatatagagaaagctcttcacgttatagctaaatcacttggtaagaaggattggaactttgacattgatccatgc 345  Q
    |||||||||| |||| |||||||||| ||  |||||||||||| |   |||||| ||||||||||| ||||||||||||||||| |||||||||||||||    
T  31376837 ttagctgatagctctcaattgtatattta--gagaaagctcttgaaagtatagccaaatcacttgggaagaaggattggaacttcgacattgatccatgc 31376740  T
Q  346 agcaataaacctaactggtttaca 369  Q
    ||||| ||||||||||||| ||||    
T  31376739 agcaacaaacctaactggtctaca 31376716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 269 - 363
Target Start/End: Complemental strand, 31295088 - 31294994
Alignment:
Q  269 tatatatagagaaagctcttcacgttatagctaaatcacttggtaagaaggattggaactttgacattgatccatgcagcaataaacctaactgg 363  Q
    ||||| |||||||||||||| | |||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||  |||||||||||    
T  31295088 tatatgtagagaaagctcttgaagttatagctaaatcacttggtaagaatgattggaacttcgacattgatccatgtagcaaccaacctaactgg 31294994  T

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Target: chr2; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 247 - 369
Target Start/End: Complemental strand, 31389130 - 31389006
Alignment:
Q  247 tagctgatacctctgaattgtatatatat--agagaaagctcttcacgttatagctaaatcacttggtaagaaggattggaactttgacattgatccatg 344  Q
    ||||||||| |||| |||||||| |||||  ||||||||||||| | | ||||||| |||||||||||||||| ||||||||||| ||||| ||||| ||    
T  31389130 tagctgatagctctcaattgtatgtatatttagagaaagctcttgaagatatagctgaatcacttggtaagaaagattggaacttcgacatcgatccttg 31389031  T
Q  345 cagcaataaacctaactggtttaca 369  Q
    ||||||  |||||| ||||||||||    
T  31389030 cagcaaccaacctatctggtttaca 31389006  T

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Target: chr2; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 31 - 170
Target Start/End: Complemental strand, 31310565 - 31310429
Alignment:
Q  31 ttttggagctactactattcaccccgacgaaagtatgattcttatttctgctata-ctaccaaacagtatagaaatttctttcatctttattttcaagtt 129  Q
    ||||| |||||||||||||||||||||||||||||||||   ||||||||||||| |||| ||||| || ||||| ||||||||| ||| ||||| | ||    
T  31310565 ttttgaagctactactattcaccccgacgaaagtatgatatctatttctgctatagctactaaacaataaagaaacttctttcat-ttttttttcta-tt 31310468  T
Q  130 attttcatcttaggattcatgttagttcaaatatcatgtat 170  Q
     |||| |||| ||||||||||||||  ||||||||||||||    
T  31310467 ctttttatctaaggattcatgttag--caaatatcatgtat 31310429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 40 - 170
Target Start/End: Complemental strand, 31283880 - 31283752
Alignment:
Q  40 tactactattcaccccgacgaaagtatgattcttatttctgctata-ctaccaaacagtatagaaatttctttcatctttattttcaagttattttcatc 138  Q
    |||||||||||||||||| |||||||||||   ||||||||||||| |||||| ||| || |||||||||||| |||||| ||||| || | |||| |||    
T  31283880 tactactattcaccccgaggaaagtatgatatctatttctgctatagctaccatacaataaagaaatttctttgatctttcttttctag-tctttttatc 31283782  T
Q  139 ttaggattcatgttagttcaaatatcatgtat 170  Q
    | |||||||||||||||  |||||||||||||    
T  31283781 taaggattcatgttagt--aaatatcatgtat 31283752  T

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Target: chr2; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 31295341 - 31295166
Alignment:
Q  1 cattctcattttgttcatatctcaaacatcttttggagctactactattcaccccgacgaaagtatgattcttatttctgctata-ctaccaaacagtat 99  Q
    ||||||||||| || |||||||| |||| ||||||||||||||||||||||||| || |||||||||||  |||||||  | ||| || ||||| | ||     
T  31295341 cattctcatttggtccatatctctaacagcttttggagctactactattcaccctgatgaaagtatgatatttatttccaccatagctcccaaataataa 31295242  T
Q  100 agaaatttctt-----tcatctttattttcaagttattttcatcttaggattcatgttagttcaaatatcatgtatt 171  Q
    | ||| |||||     | |||||| ||||| |||| ||||||||| |||||||||||||| ||||||||||| ||||    
T  31295241 ataaagttcttttatctgatctttcttttctagtt-ttttcatctaaggattcatgttagctcaaatatcatatatt 31295166  T

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Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 31377006 - 31376938
Alignment:
Q  1 cattctcattttgttcatatctcaaacatcttttggagctactactattcaccccgacgaaagtatgat 69  Q
    ||||||||||| ||||||||||  |||   ||||||| ||| |||||||||||||||||||||||||||    
T  31377006 cattctcatttggttcatatctttaactgtttttggatctaatactattcaccccgacgaaagtatgat 31376938  T

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Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 31389241 - 31389178
Alignment:
Q  6 tcattttgttcatatctcaaacatcttttggagctactactattcaccccgacgaaagtatgat 69  Q
    |||||| ||| ||||||| |||| |||||||||| |||||||||||||| || |||||||||||    
T  31389241 tcatttggtttatatctctaacagcttttggagcaactactattcaccctgatgaaagtatgat 31389178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 31258118 - 31258082
Alignment:
Q  33 ttggagctactactattcaccccgacgaaagtatgat 69  Q
    ||||||||| |||||||||||||||||||||||||||    
T  31258118 ttggagctaatactattcaccccgacgaaagtatgat 31258082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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