View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2805_high_13 (Length: 266)

Name: NF2805_high_13
Description: NF2805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2805_high_13
NF2805_high_13
[»] chr6 (3 HSPs)
chr6 (151-256)||(29463373-29463477)
chr6 (41-118)||(29462955-29463031)
chr6 (1-43)||(29462879-29462921)
[»] chr8 (1 HSPs)
chr8 (66-111)||(32011650-32011695)
[»] chr1 (1 HSPs)
chr1 (66-111)||(37408514-37408559)


Alignment Details
Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 151 - 256
Target Start/End: Original strand, 29463373 - 29463477
Alignment:
Q  151 aaacggctcatataatgatactcaatgtgttggtcgcttaggaatcatttgaaaaggtgttccattatgcatcagtttacccttcaaggaaagtaggata 250  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29463373 aaacagctcatataat-atactcaatgtgttggtcgcttaggaatcatttgaaaaggtgttccattatgcatcagtttacccttcaagtaaagtaggata 29463471  T
Q  251 cctatg 256  Q
    ||||||    
T  29463472 cctatg 29463477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 41 - 118
Target Start/End: Original strand, 29462955 - 29463031
Alignment:
Q  41 acatttggcttcttaaaaaagaataactttctctccggttagtcctttcatcaaaggatgaactaagtttttaagagt 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29462955 acatttggcttcttaaaaaagaataa-tttctctccggttagtcctttcatcaaaggatgaactaagtttttaagagt 29463031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 29462879 - 29462921
Alignment:
Q  1 ataccaacatttcttaccaaaatgaacaaaatatatcacgaca 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  29462879 ataccaacatttcttaccaaaatgaacaaaatatatcacgaca 29462921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 32011650 - 32011695
Alignment:
Q  66 actttctctccggttagtcctttcatcaaaggatgaactaagtttt 111  Q
    |||||||||| | ||||||||||||||||||||| | |||||||||    
T  32011650 actttctctctgtttagtcctttcatcaaaggatcagctaagtttt 32011695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 37408559 - 37408514
Alignment:
Q  66 actttctctccggttagtcctttcatcaaaggatgaactaagtttt 111  Q
    |||||||||| | ||||||||||| ||||||||| |||||||||||    
T  37408559 actttctctctgtttagtcctttcgtcaaaggatcaactaagtttt 37408514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University