View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2805_high_6 (Length: 380)
Name: NF2805_high_6
Description: NF2805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2805_high_6 |
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| [»] chr1 (9 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 380
Target Start/End: Complemental strand, 11034698 - 11034339
Alignment:
| Q |
18 |
aattctttctatgttggtagctatggcaaatctctgtcggaattcgggctgggagatgggtgtcgtatacagtttatgtatctcacttctttggatgttg |
117 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11034698 |
aattctttctatgttggtagctatggtaaatctctgtcggaattcgggctgggagatgggtgtcgtatacagtttatgtatctcacttctttggatgttg |
11034599 |
T |
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| Q |
118 |
aagatgatggtgctgatcacaacaacaacaacagcatttcttgcgcggatatccgtcgtgagatgttttatggatttgaactttcttggctcaacagttt |
217 |
Q |
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| T |
11034598 |
aagatgatggtgctgatcacaacaacaacaaca---tttcttgcgcggatatccgtcgtgagatgttttatggatttgaactttcttggctcaacagttt |
11034502 |
T |
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| Q |
218 |
ttgtaaattagatgtttcatatgcgtatgcggagctcgatcaaaataaccaggctcactgtaattatggttggtatatatgcaattctgcgctttagata |
317 |
Q |
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| T |
11034501 |
ttgtaaattagatgtttcgtatgcgtatgcggagctcgatcaaaataaccaggctcactgtaattatggttggtatatatgcaattctgctctttagata |
11034402 |
T |
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| Q |
318 |
ctctattttttcaagttggttgcttaattttcttttatttacaattacatcgatcttccacac |
380 |
Q |
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| T |
11034401 |
ctctattttttcaagttggttgcttaattttcttttatttacaattacatcgatcttccacac |
11034339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 379
Target Start/End: Complemental strand, 11009285 - 11008944
Alignment:
| Q |
18 |
aattctttctatgttggtagctatggcaaatctctgtcggaattcgggctgggagatgggtgtcgtatacagtttatgtatctcacttctttggatgttg |
117 |
Q |
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| T |
11009285 |
aattctttctatgttggtggctatggtaaatctctgttggaatttgggttgggagacgggtgtcatatagagtttatgtatctca---cttgggatgttg |
11009189 |
T |
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| Q |
118 |
aagatgatggtgctgatcacaacaacaacaacagcatttcttgcgcggatatccgtcgtgagatgttttatggatttgaactttcttggctcaacagttt |
217 |
Q |
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| T |
11009188 |
aagatgatgg------------caacatcaacaacatttcttgtacagacattcgtcgtaggatgtattatggatttgaactttcttggctcaacagtcg |
11009101 |
T |
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| Q |
218 |
ttgtaaattagatgtttcatatgcgtatgcggagctcgatcaaaataaccaggctcactgtaattatggttgg--tatatatgcaattctgcgctttaga |
315 |
Q |
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| T |
11009100 |
gtgtaa---acatg------gtcggtatgcagtgctcgatcaatataaccagcctcactgtaaatatggttggtatatatatgcagttgtgcgatttata |
11009010 |
T |
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| Q |
316 |
tactcta-ttttttcaagttggttgcttaa-ttttcttttatttacaattacatcgatcttccaca |
379 |
Q |
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| T |
11009009 |
tactctatttttttcaatttcgatgcttaatttttctattatttacaatcgcgtggatcttccaca |
11008944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 10921717 - 10921628
Alignment:
| Q |
135 |
cacaacaacaacaacagcatttcttgcgcggatatccgtcgtgagatgttttatggatttgaactttcttggctcaacagtttttgtaaa |
224 |
Q |
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| T |
10921717 |
cacaacaaaaacaacaacatttcatgcacagacatccgtcgtgagatcttttatggatttgaactttcttggctcaacagtttttgtaaa |
10921628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 144 - 224
Target Start/End: Original strand, 11003344 - 11003424
Alignment:
| Q |
144 |
aacaacagcatttcttgcgcggatatccgtcgtgagatgttttatggatttgaactttcttggctcaacagtttttgtaaa |
224 |
Q |
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| T |
11003344 |
aacaacaacatttcttgtacggatattcatcgtatgatgttttatggatttgaactttcatggctcaatagtctttgtaaa |
11003424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 146 - 224
Target Start/End: Original strand, 11000366 - 11000444
Alignment:
| Q |
146 |
caacagcatttcttgcgcggatatccgtcgtgagatgttttatggatttgaactttcttggctcaacagtttttgtaaa |
224 |
Q |
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| T |
11000366 |
caacaacattttttgcacggatattcgtcgtatgatgttttatggatttgaactttcatggctcaatagcctttgtaaa |
11000444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 10905304 - 10905232
Alignment:
| Q |
139 |
acaacaacaacagcatttcttgcgcggatatccgtcgtgagatgttttatggatttgaactttcttggctcaa |
211 |
Q |
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| T |
10905304 |
acaacaacagtaacatttcttgcaaggacttccgtcgtatgatgtattatggatttgaattttcttggctcaa |
10905232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 10975202 - 10975134
Alignment:
| Q |
152 |
catttcttgcgcggatatccgtcgtgagatgttttatggatttgaactttcttggctcaacagtttttg |
220 |
Q |
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| T |
10975202 |
catttcttgcaaggacttccgtcgtatgatgtattatggatttgaattttcttggctcaatagtatttg |
10975134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 224
Target Start/End: Complemental strand, 10988073 - 10987989
Alignment:
| Q |
140 |
caacaacaacagcatttcttgcgcggatatccgtcgtgagatgttttatggatttgaactttcttggctcaacagtttttgtaaa |
224 |
Q |
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| T |
10988073 |
caacaacaataacatttcttgcacggacatcaaccgtatgatgtcttatggatttgaagtctcttggctcaatagtctttgtaaa |
10987989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 224
Target Start/End: Complemental strand, 11019241 - 11019157
Alignment:
| Q |
140 |
caacaacaacagcatttcttgcgcggatatccgtcgtgagatgttttatggatttgaactttcttggctcaacagtttttgtaaa |
224 |
Q |
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| T |
11019241 |
caacaacaataacatttcttgcacggacatcaaccgtatgatgtcttatggatttgaagtctcttggctcaatagtctttgtaaa |
11019157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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