View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2805_low_1 (Length: 797)
Name: NF2805_low_1
Description: NF2805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2805_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 702; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 702; E-Value: 0
Query Start/End: Original strand, 8 - 785
Target Start/End: Original strand, 40565290 - 40566069
Alignment:
| Q |
8 |
cacccacgtcctatgttcttcggcttctctgaattcagcttcataccaaacttctgtcgcagcctcacatccgaaaaaacaatgcctatcactctcccac |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40565290 |
cacccacgtcctatgttcttcggcttctctgaattcagcttcataccaaacttctgtcgcagcctcacatccgaaaaaacaatgcctatcactctcccac |
40565389 |
T |
|
| Q |
108 |
atcagctcacaactttcacactcgagggcaggaaccacttctttgaataccaataatatgcatgcaaatatgcacatcaatgtcatcaaaaacaaagact |
207 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40565390 |
atcagctcacaactttcaccctcgagggcaggaaccacttctttgaataccaataatatgcatacaaatatgcacatcaatgtcatcaaaaacaaagact |
40565489 |
T |
|
| Q |
208 |
ttgtcaataacagagacgttagtatatataacattatcatgatcgatcaaaaggattagaccatttataatataaatatgtgtacaaat---tcacgttt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
40565490 |
ttgtcaataacagagacgttagtatatataacattatcatgatc----aaaaggattagaccatttataatataaatatgtatacaaataattcacgttt |
40565585 |
T |
|
| Q |
305 |
agaatcacaactactcaacggtttcttttttatacataatatacaaacatggtttttgacaaaaacagaatatataacaatatttttgactggacatatt |
404 |
Q |
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| T |
40565586 |
agaatcataactactcaacggtttcttttttatacataatatacaaacatggtttttgacaaaaacagaatatataacaatatttttgactggacatatt |
40565685 |
T |
|
| Q |
405 |
atataaacatgactatatagt---aattgcaatgtctctaagcatgctagcttttgataatgtttaattaatttcattttgctaacacaggtgtgcattc |
501 |
Q |
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| T |
40565686 |
atataaacatgactatatagtagtaattgcaatgtctctaagcatgctagcttttgataatgtttaattaatttcattttgctaacacaggtgtgcattc |
40565785 |
T |
|
| Q |
502 |
tgagttctgacctattctacttttaaaacttaaacaactgattagagacattgcaatcactgttaccaaaaactaaagttacattataataaatgttaga |
601 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40565786 |
tgagttctgacctattctacttttaaaacttaaacaactgattagagacattgcaatcactgttaccaaaaactaaagttacattataataaatgttaga |
40565885 |
T |
|
| Q |
602 |
caaaaccgtgtttaatttgatcattccattccatacaggaaaattcaatcattttgacttttctattattaaggttacaaggagaataaataaatactaa |
701 |
Q |
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| T |
40565886 |
caaaaccgtgtttaatttgatcattccattccatacaggaaaattcaatcattttgacttttctattattaaggttacaaggagaataaataaatactaa |
40565985 |
T |
|
| Q |
702 |
acaaaatctaaggatttgtataccgatgaacctgnnnnnnntagcaaagccatggctgtgcactcaaaacaattgctgctgatg |
785 |
Q |
| |
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| T |
40565986 |
acaaaatctaaggatttgtataccgatgaacctgaaaaaaatagcaaagccatggctgtgcactcaaaacaattgctgctgatg |
40566069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 509 - 673
Target Start/End: Original strand, 40570490 - 40570650
Alignment:
| Q |
509 |
tgacctattctacttttaaaacttaaacaactgattagagacattgcaatcactgttaccaaaaactaaagttacattataataaatgttagacaaaacc |
608 |
Q |
| |
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|||||| |||||| |||||| ||||||||||| ||||| || |||||||||||||| ||||||||||||||||||||| ||||||| |||||| | ||| |
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| T |
40570490 |
tgacctgttctacctttaaatcttaaacaactagttagaaacgttgcaatcactgttgccaaaaactaaagttacattaaaataaatattagac-agacc |
40570588 |
T |
|
| Q |
609 |
gtgtttaatttgatcattccattccatacaggaaaattcaatcattttgacttttctattattaa |
673 |
Q |
| |
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| ||||||||||||||| ||||| | ||||||| ||| ||||||||| ||||||||| |||| |
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| T |
40570589 |
at-cttaatttgatcattcgattccgt--aggaaaaatcagtcattttgatttttctatttttaa |
40570650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 597 - 665
Target Start/End: Original strand, 40595253 - 40595321
Alignment:
| Q |
597 |
ttagacaaaaccgtgtttaatttgatcattccattccatacaggaaaattcaatcattttgacttttct |
665 |
Q |
| |
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| T |
40595253 |
ttagacaaaaccatgtttaatttcatcattccaatctgtacaacaaaaatcattcattttgacttttct |
40595321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 357 - 409
Target Start/End: Original strand, 40570283 - 40570336
Alignment:
| Q |
357 |
tttttgacaaaaacagaatatataa-caatatttttgactggacatattatata |
409 |
Q |
| |
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| T |
40570283 |
tttttgacagaaacataatatataaacaatatttttgactggaaataatatata |
40570336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 548 - 595
Target Start/End: Original strand, 8490224 - 8490271
Alignment:
| Q |
548 |
gacattgcaatcactgttaccaaaaactaaagttacattataataaat |
595 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8490224 |
gacattgcaatcactgttgccaaaaactaaagttacattataataaat |
8490271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 582 - 673
Target Start/End: Original strand, 8490288 - 8490376
Alignment:
| Q |
582 |
acattataataaatgttagacaaaaccgtgtttaatttgatcattccattccatacaggaaaattcaatcattttgacttttctattattaa |
673 |
Q |
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|||||||||||||| ||||||||||| | || ||||||||||||| |||||||| |||||| ||| ||||||||||||||||||| |||| |
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| T |
8490288 |
acattataataaataatagacaaaaccatctt-aatttgatcattcaattccata--ggaaaaatcagtcattttgacttttctatttttaa |
8490376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 380 - 421
Target Start/End: Original strand, 8490036 - 8490077
Alignment:
| Q |
380 |
aacaatatttttgactggacatattatataaacatgactata |
421 |
Q |
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| T |
8490036 |
aacaatatttttgactggacataatatataaacatgactata |
8490077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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