View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2805_low_10 (Length: 377)
Name: NF2805_low_10
Description: NF2805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2805_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 13 - 363
Target Start/End: Complemental strand, 45400678 - 45400335
Alignment:
| Q |
13 |
aatatttttcccatattttttattcatcaatgacaactatttatcccgtgatttttgtatcattaatgaatatatgtgatgtgattctttcaannnnnnn |
112 |
Q |
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| T |
45400678 |
aatatttttcccatattttttattcatcaatgacaactatttatcccgtgatttttgtatcaataatgaatatatgtgatgtgattctttcaattttttt |
45400579 |
T |
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| Q |
113 |
cataacaaaattttatcttgtgcttttttaagtaaaacataatcgataattagttggagaggtg-agaaaggatcagtcatcagatgaatatgattaata |
211 |
Q |
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| T |
45400578 |
cataacaaatttttatcttgtgcttttt-aagtaaaacataatcgataattagttggagaggtggagaaaggatcaa-------atgaatatgattaata |
45400487 |
T |
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| Q |
212 |
gaaatggacacacttctatctctttgtaggaattctaatatcgagcgtatgaggtaagaacaaagattgaaaagagattttggtgaaaatgttcaactaa |
311 |
Q |
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| T |
45400486 |
gaaatggacacacttatatctctttgtaggaattctaatatcgagcgtatgaggtaagaacaaagattgaaaagagattttggtgaaaatgttcaactaa |
45400387 |
T |
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| Q |
312 |
atcttattgatcaaccaatgccttatataggcttattgtatgagtaaaactt |
363 |
Q |
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| T |
45400386 |
atcttattgatcaaccaatgccttatataggcttattgtatgagtaaaactt |
45400335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 279
Target Start/End: Original strand, 27363148 - 27363411
Alignment:
| Q |
8 |
cgaagaatatttttcccatattttttattcatcaatgacaactatttatcccgtgatttttgtatcattaatgaatatatgtgatgtgattctttcaann |
107 |
Q |
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| T |
27363148 |
cgaaaaatatttttcccatattttttattcatcaatgacaactatttatcccgtgatttttgtatcaataatgaatatat-tgatgtgattctttcaatt |
27363246 |
T |
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| Q |
108 |
nnnnncataacaaaattttatcttgtgcttttttaagtaaaacataatcgataattagttggagaggtgagaaaggatcagtcatcagatgaatatgatt |
207 |
Q |
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| T |
27363247 |
tttttcataacaaatttttatcttgtgcttttttaagtaaaacataatcgataattagttggagagatgagaaagg-------atcagatgaatatgatt |
27363339 |
T |
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| Q |
208 |
aatagaaatggacacacttctatctctttgtaggaattctaatatcgagcgtatgaggtaagaacaaagatt |
279 |
Q |
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| T |
27363340 |
aatagaaatggacacacttctatctctttgtaggaattctaatatcgagcatatgaggtaagaacaaagatt |
27363411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 263 - 363
Target Start/End: Original strand, 27363504 - 27363600
Alignment:
| Q |
263 |
aggtaagaacaaagattgaaaagagattttggtgaaaatgttca-actaaatcttattgatcaaccaatgccttatataggcttattgtatgagtaaaac |
361 |
Q |
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| T |
27363504 |
aggtaagaacaaagattgaaaagagatt-----gaaaatgttcatactaaatcttattgatcaaccaatgccttatataggcttattgtatgagtaaaac |
27363598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 351
Target Start/End: Complemental strand, 11853955 - 11853884
Alignment:
| Q |
280 |
gaaaagagattttggtgaaaatgttcaactaaatcttattgatcaaccaatgccttatataggcttattgta |
351 |
Q |
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| T |
11853955 |
gaaaggagattttggtgaaagggttcaactgaatattactgatcaagtaatgccttatataggcttattgta |
11853884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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