View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2805_low_13 (Length: 351)
Name: NF2805_low_13
Description: NF2805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2805_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 93 - 333
Target Start/End: Complemental strand, 29462758 - 29462522
Alignment:
| Q |
93 |
tatataatctctgccttcggccaattattgatcttaattnnnnnnnnntcttgagagtgatcttaattattctttaactatttgagtttaacagcacaca |
192 |
Q |
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| T |
29462758 |
tatataatctctgccttcggccaattattgatcttaattaaaaaaaaatcttgagagtgatcttaattattctttaactatttgagtttaacagcacaaa |
29462659 |
T |
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| Q |
193 |
taattaagttccactatattatttataagggcccaagctacgcaaccttggttgaaatgaagcaaatatacaaactatagtcatggcacgaaatattctt |
292 |
Q |
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| T |
29462658 |
taattaagttccactatattatttataagggcccaagctacgcaaccttggttgaaatgaagcaaatatacaaa----agtcatggcacgaaatattctt |
29462563 |
T |
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| Q |
293 |
cttctttctgggattgttgtaattcttacctatgtgtctat |
333 |
Q |
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| T |
29462562 |
cttctttctgggattgttgtaattcttacctatgtggctat |
29462522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 29462879 - 29462783
Alignment:
| Q |
1 |
taatattattttgttcgtttaagttcaattccttttttgacaaaaatgagtgggaatatataaaatcgtaatgtaagggcccagtcacatgatatata |
98 |
Q |
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| T |
29462879 |
taatattattttgttcgtttaagttcaataccttttttgacaaaaatgagtgggaatatataaaatcgtattgtaa-ggcccagtcacatgatatata |
29462783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 216 - 320
Target Start/End: Original strand, 29607935 - 29608038
Alignment:
| Q |
216 |
tataagggcccaagctacgcaaccttggttgaaatgaagcaaatatacaaactatagtcatggcacgaaatattcttcttctttctgggattgttgtaat |
315 |
Q |
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| T |
29607935 |
tataagggcccaagctacgcaactttggttgaa-tgaagcaaatatacgaactatagtcatggcattaaatattcttcttctttcaggagttgttgtgat |
29608033 |
T |
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| Q |
316 |
tctta |
320 |
Q |
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||||| |
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| T |
29608034 |
tctta |
29608038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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