View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2805_low_15 (Length: 309)
Name: NF2805_low_15
Description: NF2805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2805_low_15 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 17 - 309
Target Start/End: Original strand, 11034042 - 11034329
Alignment:
| Q |
17 |
gaacagaatatgggtaggcaaccaaataactcatgcgaaaaatattgcccaatattacttactattgacaagttttttagaagaaaagacatcatactaa |
116 |
Q |
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| T |
11034042 |
gaacagaatatgggtaggcaaccaaataactcatgcgaaaaatattgcccaatattact----atttacaagttttttagaagaaaagacatcatactaa |
11034137 |
T |
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| Q |
117 |
caacagaacaagnnnnnnnnnatagtttttgtactgaaaatttgttttctaaactttattttaagtcttatgtcttgcttacctatgcgactcgataaac |
216 |
Q |
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| T |
11034138 |
caacagaacaagtttttttt-atagtttttgtactgaaaatttgttttctaaactttattttaagtcttatgtcttgcttacctgtgcgactcgataaac |
11034236 |
T |
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| Q |
217 |
gtgcaactatccaagccacattattccagtaagctgcaaggacatacacaaagcatagtaacagattaagtgttaattagtagcactcactct |
309 |
Q |
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| T |
11034237 |
atgcaactatccaagccacattattccagtaagctgcaaggacatacacaaagcatagtaacagattgagtgttaattagtagcactcactct |
11034329 |
T |
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Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 210 - 309
Target Start/End: Original strand, 11008834 - 11008933
Alignment:
| Q |
210 |
gataaacgtgcaactatccaagccacattattccagtaagctgcaaggacatacacaaagcatagtaacagattaagtgttaattagtagcactcactct |
309 |
Q |
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|||||||||||||||||||||||| | |||||||||||| ||||||| || ||| |||||||||| ||| ||| ||||||| ||||||||||||||||| |
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| T |
11008834 |
gataaacgtgcaactatccaagccgcgttattccagtaatctgcaagagcaaacataaagcatagtgacatattgagtgttatttagtagcactcactct |
11008933 |
T |
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