View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2805_low_16 (Length: 294)
Name: NF2805_low_16
Description: NF2805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2805_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 96 - 277
Target Start/End: Complemental strand, 5392587 - 5392405
Alignment:
| Q |
96 |
ggtttgtcatccattttgaggatattattttcctctagttcattagaatgatacattggtacatttgtcnnnnnnn-gatgatacattggtcttggaaga |
194 |
Q |
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| T |
5392587 |
ggtttgtcatccattttgaggagattattttcctctagttcattagaatgatacattggtctatttgtcaaaaaaaagatgatacattggtcttggaaga |
5392488 |
T |
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| Q |
195 |
ttgtttatttccacctatattgttctattttgaacctagaaccttttaaagaatatatacttttttgaattaatagtgtttta |
277 |
Q |
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| T |
5392487 |
ttgtttatttccacctatattgttctattttgaacctagaaccttttaaagaatatatacttttttgaattaatagtgtttta |
5392405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 5356900 - 5356850
Alignment:
| Q |
98 |
tttgtcatccattttgaggatattattttcctctagttcattagaatgata |
148 |
Q |
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|||||| |||||||| |||| |||||| ||||||| ||||||||||||||| |
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| T |
5356900 |
tttgtcttccattttaaggagattattatcctctacttcattagaatgata |
5356850 |
T |
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