View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2805_low_18 (Length: 265)
Name: NF2805_low_18
Description: NF2805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2805_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 17341104 - 17341218
Alignment:
| Q |
17 |
cattaatagcatacaaagactaatgcaaatcacacaaaaatacaaacactaattgtttggataaaaatcttaattaaacaattattatataatcattatt |
116 |
Q |
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| T |
17341104 |
cattaatagcatacaaagactaatgcaaatcacaaaaaaatacaaacactaattgtttggataaaaatcttaattaaacaattattatataatcattatt |
17341203 |
T |
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| Q |
117 |
ttataagctatttct |
131 |
Q |
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| T |
17341204 |
ttataagctatttct |
17341218 |
T |
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Target: chr1; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 191 - 265
Target Start/End: Original strand, 17341287 - 17341361
Alignment:
| Q |
191 |
cttacaagattaaaatagattatacacattatagtttgttttttataaactctctcaaacatgctcataaataag |
265 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
17341287 |
cttacaagataaaaatagattatacacattatagtttgttttttataaactctctcaatcatgctcataaataag |
17341361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 205 - 265
Target Start/End: Original strand, 17341399 - 17341458
Alignment:
| Q |
205 |
atagattatacacattatagtttgttttttataaactctctcaaacatgctcataaataag |
265 |
Q |
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| T |
17341399 |
atagattatacacattataatttgtttt-tataaactctctcaaacatgctcataaataag |
17341458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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