View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2805_low_19 (Length: 250)
Name: NF2805_low_19
Description: NF2805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2805_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 82 - 231
Target Start/End: Original strand, 27451578 - 27451727
Alignment:
| Q |
82 |
aatatatactagttttctttcaaatgtatctattcaaattactaatgttggcatgagagaagttcctccttcctttacattctttgctcatattattagc |
181 |
Q |
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| T |
27451578 |
aatatatactagttttctttcaaatgtatctattcaaattactaatgttggcatgagagaagttcctccttcctttacattctttgctcatagtattagc |
27451677 |
T |
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| Q |
182 |
aaagccacatcatttggcctacattttcattaaagtccccacactcatat |
231 |
Q |
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| T |
27451678 |
aaagccacatcatttggcctacatttccattaaagtccccacacccatat |
27451727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 85
Target Start/End: Original strand, 27451259 - 27451292
Alignment:
| Q |
52 |
agttttgatttttgaatctgcaaatcccaaaata |
85 |
Q |
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| T |
27451259 |
agttttgatttttgaatctgcaaatctcaaaata |
27451292 |
T |
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