View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2805_low_2 (Length: 724)
Name: NF2805_low_2
Description: NF2805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2805_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 607; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 19 - 703
Target Start/End: Original strand, 6916249 - 6916929
Alignment:
| Q |
19 |
gattccagtgaacttgcctttaagttggcttctatctatgcttttagagagtgttacacagcttccagaccagttatattagaacctgttatgcttgttg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
6916249 |
gattccagtgaacttgcctttaagttggcttctatctatgcttttagagagtgttacacagcttccagaccagttatattagaacctgttatgct----g |
6916344 |
T |
|
| Q |
119 |
aactgaaagtaccaacagaatttcagggagctgttgctggtgacctcaacaagagaaaaggtgtgattgttggcaatgatcaggatgaagatgattctgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||| |
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| T |
6916345 |
aactgaaagtaccaacagaatttcagggagctgttgctggtgacctcaacaagagaaaaggtgtgattgttggcaatgttcaggacgaagattattctgt |
6916444 |
T |
|
| Q |
219 |
cataacagctcatgtccctcttaacaatatgtttgggtattctacggctattcgttcgatgacacagggaaagggtgaattcacaatggaatataaggaa |
318 |
Q |
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| T |
6916445 |
cattacagctcatgtgcctcttaacaatatgtttgggtattctacggctattcgttcgatgacacagggaaagggtgaattcacaatggaatataaggaa |
6916544 |
T |
|
| Q |
319 |
cattcacgtgtttctcatgatgtacagacccgattgataaacacatacaagggcaataaggcagctgaatgatatggcctttcaagtacacggtcctaaa |
418 |
Q |
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| T |
6916545 |
cattcacgtgtttctcatgatgtacagacccgattgataaacacatacaagggcaataaggcagctgaatgatatggcctttcaagtacacggtcctaaa |
6916644 |
T |
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| Q |
419 |
tttattgggggtagttatctagaaaaaagaattgtagttttggttcannnnnnngggtcaacaaaattttgaaagcaaataaaaagtagctataattgtg |
518 |
Q |
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| T |
6916645 |
ttttttgggggtagttatctggaaaaaagaattgtggttttggttcatttttttgggtcaacaaaattttgaaagcaaataaaaagtagctataattgtg |
6916744 |
T |
|
| Q |
519 |
atagtgtacaatttggtgtcactccaatgtttttattgggaaacttgatttaatattaaatttatcatatatttgcgttttcttatattttagttgacac |
618 |
Q |
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| T |
6916745 |
atagtgtacaatttggtgtcactccaatgtttttattgggaaacttgatttaacattaaatttatcatatatttgcgttttcttatattttagttgacac |
6916844 |
T |
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| Q |
619 |
atacatgctcattttcaattctatcatacattgttcagctagtttagatttttgttcacttatcaatgcacttccgactgtaaat |
703 |
Q |
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| T |
6916845 |
atacatgctcattttcaattctatcatacattgttcagctagtttagatttttgttcacttatcaatgcacttctgactgtaaat |
6916929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 652 - 701
Target Start/End: Original strand, 6890644 - 6890693
Alignment:
| Q |
652 |
ttcagctagtttagatttttgttcacttatcaatgcacttccgactgtaa |
701 |
Q |
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| T |
6890644 |
ttcagctagtttagattttggttcacttgtcaatgtacttctgactgtaa |
6890693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 4e-40; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 283 - 391
Target Start/End: Complemental strand, 15036049 - 15035941
Alignment:
| Q |
283 |
cagggaaagggtgaattcacaatggaatataaggaacattcacgtgtttctcatgatgtacagacccgattgataaacacatacaagggcaataaggcag |
382 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||| |||||||||||||||||||| |
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| T |
15036049 |
cagggaaagggtgaatttacaatggaatataaggaacattcacctgtttctcatgatgtacagacccaattggtaaacgcatacaagggcaataaggcac |
15035950 |
T |
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| Q |
383 |
ctgaatgat |
391 |
Q |
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||||||||| |
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| T |
15035949 |
ctgaatgat |
15035941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 68 - 171
Target Start/End: Complemental strand, 15037928 - 15037825
Alignment:
| Q |
68 |
agtgttacacagcttccagaccagttatattagaacctgttatgcttgttgaactgaaagtaccaacagaatttcagggagctgttgctggtgacctcaa |
167 |
Q |
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|||||||||| |||||||||||| ||||||||| ||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15037928 |
agtgttacactgcttccagaccaactatattagagcctgttatgcttgttgagctaaaagtaccaaatgaatttcagggagctgttgctggtgacctcaa |
15037829 |
T |
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| Q |
168 |
caag |
171 |
Q |
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|||| |
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| T |
15037828 |
caag |
15037825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 15036192 - 15036138
Alignment:
| Q |
232 |
gtccctcttaacaatatgtttgggtattctacggctattcgttcgatgacacagg |
286 |
Q |
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|||||||||||||||||||||||||| ||||| ||| |||||||||||||||||| |
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| T |
15036192 |
gtccctcttaacaatatgtttgggtactctacagctcttcgttcgatgacacagg |
15036138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 15038102 - 15038055
Alignment:
| Q |
19 |
gattccagtgaacttgcctttaagttggcttctatctatgcttttaga |
66 |
Q |
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||||||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
15038102 |
gattccagtgagcttgcctttaagatggcttctatctatgcttttaga |
15038055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 15037738 - 15037676
Alignment:
| Q |
171 |
gagaaaaggtgtgattgttggcaatgatcaggatgaagatgattctgtcataacagctcatgt |
233 |
Q |
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|||||| ||| |||||||||||||||||||||||| |||||| |||||||| | ||||||||| |
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| T |
15037738 |
gagaaagggtatgattgttggcaatgatcaggatggagatgactctgtcattatagctcatgt |
15037676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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