View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2805_low_20 (Length: 249)
Name: NF2805_low_20
Description: NF2805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2805_low_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 6350656 - 6350898
Alignment:
| Q |
1 |
attaccaactctctctttttaacctttgttgtaaccgttaagaatggaagaagaagaaagattacttgagaagcaagtaacttgacatagctctaagtaa |
100 |
Q |
| |
|
||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
6350656 |
attactaactctctctctttaacctctgttgtaaccgttaagaatggaagaagaagaaagattacttgagaagcaagtaacttgacatagctctaactaa |
6350755 |
T |
|
| Q |
101 |
cttgccacataa--ttagattctgttatggcagttagagagagttatgatagagtgcagttagtctatgatagctaa--gcttaaccattgtaccaaact |
196 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||| |||| ||||||||| |
|
|
| T |
6350756 |
cttgccacataagcttagattctgttatggcagttagagagagttatgatagagtgcagttagtctatggtaggtaaacgcttaagcattttaccaaact |
6350855 |
T |
|
| Q |
197 |
cagttagtgaaataatgaattttccctcttctattctcttcat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6350856 |
cagttagtgaaataatgaattttccctcttctattctcttcat |
6350898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 47 - 152
Target Start/End: Original strand, 35081986 - 35082093
Alignment:
| Q |
47 |
gaagaagaagaaagattacttgagaagcaagtaacttgacatagctctaagtaacttgccacataa--ttagattctgttatggcagttagagagagtta |
144 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||| || |
|
|
| T |
35081986 |
gaagaagaagaaagattacttgagaagcaagtaacttgacatagctctaactaacttgccacataagcttagattctgctatggcagttagagagaacta |
35082085 |
T |
|
| Q |
145 |
tgatagag |
152 |
Q |
| |
|
|||||||| |
|
|
| T |
35082086 |
tgatagag |
35082093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 35084185 - 35084244
Alignment:
| Q |
176 |
gcttaaccattgtaccaaactcagttagtgaaataatgaattttccctcttctattctct |
235 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35084185 |
gcttaaccattgtaacaaactcggttagtgaaataatgaattttctctcttctattctct |
35084244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 11021815 - 11021744
Alignment:
| Q |
37 |
gttaagaatggaagaagaagaaagattacttgagaagcaagtaacttgacatagctctaagtaacttgccac |
108 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||| |||||||||| |||||||||||||| |||||||||| |
|
|
| T |
11021815 |
gttaagaatggaagaagatggaagattacttgaggagcaagtaacctgacatagctctaacaaacttgccac |
11021744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 6290254 - 6290214
Alignment:
| Q |
37 |
gttaagaatggaagaagaagaaagattacttgagaagcaag |
77 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
6290254 |
gttaagaatggaagaagaaggaagattacttgaggagcaag |
6290214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University